New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3455551	38 (0.770)	3 (0.060)	3/244	NT	8.5%	coding (340/1953 nt)	aacs	acetoacetyl‑CoA synthetase
	?	NC_002947	= 3455614	28 (0.600)					coding (277/1953 nt)	aacs	acetoacetyl‑CoA synthetase

AGGCTGGTGCAGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCGGGCATTTGCGGCCCTTCGCTGAGCACCTGGCTGGGTGGG  >  NC_002947/3455406‑3455699                                                                                                                                                  |                                                                                                                                                     aGGCTGGTGCAGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTc                                                                                                                                                   <  7:51056/149‑1 (MQ=255)  ggCTGGTGCAGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTcg                                                                                                                                                  >  6:125435/1‑149 (MQ=255)     tGGTGCAGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGATCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCgcgc                                                                                                                                               >  1:246215/1‑149 (MQ=255)       gTGCAGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTg                                                                                                                                             <  5:242552/149‑1 (MQ=255)           aGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCg                                                                                                                                         >  6:142359/1‑149 (MQ=255)                         accaGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGc                                                                                                                           >  5:55131/1‑149 (MQ=255)                           caGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGa                                                                                                                         <  5:142359/149‑1 (MQ=255)                           caGTGTGTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGa                                                                                                                         <  4:20934/149‑1 (MQ=255)                                        gTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCgg                                                                                                               <  6:160628/146‑1 (MQ=255)                                        gTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCgg                                                                                                               >  5:160628/1‑146 (MQ=255)                                          aTTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGgt                                                                                                          >  2:23114/1‑149 (MQ=255)                                            tGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGgtc                                                                                                         <  4:138285/148‑1 (MQ=255)                                              ggCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGgtcgtc                                                                                                      >  7:157824/1‑149 (MQ=255)                                               gCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGtcgtcg                                                                                                     >  1:45597/1‑149 (MQ=255)                                                             aCCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGcagcag                                                                                       <  7:139356/149‑1 (MQ=255)                                                              cccGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGcagcag                                                                                       <  6:55131/148‑1 (MQ=255)                                                                     gCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCg                                                                                <  2:45597/148‑1 (MQ=255)                                                                     gCCCGGGACGATACCTACCGCCTTGAATGCCGGTTGCAGGCCGGCCTCCTGTGCGGCCAGTTCGGCATGGGTGAACACctgctgcgccgccgcgacgaccgcccggccgtggtcgccgtacgcgaagacggccagcgcgaagtgttcac                                                                               <  7:137822‑M1/149‑72 (MQ=255)                                                                       ccGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCggg                                                                                                              >  6:213220/1‑116 (MQ=255)                                                                       ccGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCggg                                                                                                              <  5:213220/116‑1 (MQ=255)                                                                         gggACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCa                                                                             >  1:217852/1‑147 (MQ=255)                                                                               aTACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAg                                                                     <  2:246215/149‑1 (MQ=255)                                                                                    taccGCCTTGAATGCCGTTTGCAGGCCTGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGcagcag                                                                                       <  8:235426/126‑1 (MQ=255)                                                                                    taccGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACctgctgcgccgccgcgacgaccgcccggccgtggtcgccgtacgcgaagacggccagcgcgaagtgttcaccc                                                                             <  8:284772‑M1/136‑74 (MQ=255)                                                                                    taccGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACctgctgcgccgccgcgacgaccgcccggccgtggtcgccgtacgcgaagacggccagcgcgaagtgttcaccc                                                                             >  7:284772‑M1/1‑63 (MQ=255)                                                                                    taccGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTgg                                                                >  2:181629/1‑149 (MQ=255)                                                                                     accGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGcagcag                                                                                       <  1:8048/125‑1 (MQ=255)                                                                                     accGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGcagcag                                                                                       >  2:8048/1‑125 (MQ=255)                                                                                      ccGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTgg                                                                <  3:281569/147‑1 (MQ=255)                                                                                           ttGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGc                                                         >  6:105722/1‑149 (MQ=255)                                                                                               ttgacGTTTGCAGGCCGGCCACCTGTTCGGCCAGTTCGGCATGGTTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCTGGCGGTCGTCGCGGCGGCGCAGCATGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAAc                                                     <  5:103777/145‑1 (MQ=255)                                                                                               aTGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAAc                                                     >  1:204161/1‑149 (MQ=255)                                                                                                  ccGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCa                                                   <  8:157824/148‑1 (MQ=255)                                                                                                          aGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATc                                          <  2:217852/149‑1 (MQ=255)                                                                                                          aGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGCTCAGGGTGGCATTGGCGAACCACTGTGCTTc                                          >  1:270017/1‑149 (MQ=255)                                                                                                           ggccggccACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCgcgg                                                                                                  >  6:182792/1‑92 (MQ=255)                                                                                                           ggccggccACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCgcgg                                                                                                  <  5:182792/92‑1 (MQ=255)                                                                                                            gccggccACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCgg                                        >  8:264779/1‑149 (MQ=255)                                                                                                            gccggccACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCgg                                        <  2:204161/149‑1 (MQ=255)                                                                                                                    ccTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCGGGCATTTGc                                <  5:125435/149‑1 (MQ=255)                                                                                                                       gtgCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGCACCACTGTGCATCggg                                       >  6:211671/1‑139 (MQ=255)                                                                                                                       gtgCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCggg                                       <  5:211671/139‑1 (MQ=255)                                                                                                                                         gggTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGgtgttcacccatgccgaactggccgcacaggtggccggcctgcaaacggcattcaaggcggta                        >  7:284772‑M2/1‑73 (MQ=255)                                                                                                                                         gggTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGgtgttcacccatgccgaactggccgcacaggtggccggcctgcaaacggcattcaaggcggta                        <  8:284772‑M2/136‑64 (MQ=255)                                                                                                                                          ggTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGCTCAGGGTGGCATTGGCGAACCACTGTGCATCGGGCATTTGCGGCCCTTCGCTGAGCACctgg           <  2:270017/148‑1 (MQ=255)                                                                                                                                           gTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGgtgttcacccatgccgaactggccgcacaggaggccggcctgcaaccggcattcaaggcggtaggtatcgtcccgggc         <  7:137822‑M2/149‑79 (MQ=255)                                                                                                                                              aaCACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCTGCGCAGCAGGTGTTCGGCAAAGTTCATGGTGGCATTGGCGAACCACTGTGCATCGGGCATTTGCGGCCCTTCGCTGAGCACctggctgg       <  1:189240/148‑1 (MQ=255)                                                                                                                                                  cTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCGGGCATTTGCGGCCCTTCGCTGAGCACCTGGCtgggtggg  <  5:105722/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     AGGCTGGTGCAGGCGAGCATGGCCACCAGTGTTTGCCAGGTATTGGGCATGATGGCGGCTACCCGGTCGCCCGGGACGATACCTACCGCCTTGAATGCCGTTTGCAGGCCGGCCACCTGTGCGGCCAGTTCGGCATGGGTGAACACTTCGCGCTGGCCGTCTTCGCGTACGGCGACCACGGCCGGGCGGTCGTCGCGGCGGCGCAGCAGGTGTTCGGCAAAGTTCAGGGTGGCATTGGCGAACCACTGTGCATCGGGCATTTGCGGCCCTTCGCTGAGCACCTGGCTGGGTGGG  >  NC_002947/3455406‑3455699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.