New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3552652	32 (0.650)	3 (0.070)	3/238	NT	8.9%	coding (309/978 nt)	PP_3137	group 2 family glycosyl transferase
	?	NC_002947	= 3552675	32 (0.700)					coding (332/978 nt)	PP_3137	group 2 family glycosyl transferase

GGCGCTGGACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCTGTGGCGGC  >  NC_002947/3552508‑3552793                                                                                                                                                 |                                                                                                                                                agatcTGGACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGATGGCTGGCCACGGCGCAgg                                                                                                                                             <  3:243654/145‑1 (MQ=255)        gACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCt                                                                                                                                      >  5:308555/1‑149 (MQ=255)        gACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTAGTCGATGGCGACTGCTAGGTGAATGCCAGCTGGCTGGCCACGGCGaagg                                                                                                                                             >  4:243654‑M1/1‑138 (MQ=255)         aCATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCtt                                                                                                                                     <  2:144299/149‑1 (MQ=255)           aTGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGa                                                                                                                                   <  5:54665/149‑1 (MQ=255)           aTGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGa                                                                                                                                   <  6:308555/149‑1 (MQ=255)                           ccgccgCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCcgccgtg                                                                                                                 <  1:80561‑M2/149‑8 (MQ=255)                           ccgccgCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCcgccgtg                                                                                                                 <  2:112501‑M2/149‑8 (MQ=255)                            cgccgcACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGgggtgctgctcaagaaaagcctgcgccgtgg                                                                                                                  <  7:117853‑M1/149‑32 (MQ=255)                            cgccgcACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCcgccgtgg                                                                                                                <  7:242500‑M2/149‑9 (MQ=255)                                   cgcgCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAgtggt                                                                                                         <  7:95058/149‑1 (MQ=255)                                      gcCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGgtgtg                                                                                                      >  6:54057/1‑149 (MQ=255)                                             aTGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGc                                                                                               >  7:37931/1‑149 (MQ=255)                                             aTGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGc                                                                                               <  2:80561/149‑1 (MQ=255)                                             aTGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGc                                                                                               <  8:242500/149‑1 (MQ=255)                                                aaGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCgg                                                                                            >  7:40945/1‑149 (MQ=255)                                                           gccTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGgggtgctgctcaagaaaagcctgcgccgtggc                                                                                                                 <  5:288927‑M1/119‑33 (MQ=255)                                                           gccTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGgggtgctgctcaagaaaagcctgcgccgtggc                                                                                                                 >  6:288927‑M1/1‑87 (MQ=255)                                                           gccTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCtt                                                                                 <  3:270762/149‑1 (MQ=255)                                                             cTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTcc                                                                               <  8:37931/149‑1 (MQ=255)                                                             cTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTcc                                                                               >  3:178338/1‑149 (MQ=255)                                                                       cTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTc                                                                     <  5:184621/149‑1 (MQ=255)                                                                                  gATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACt                                                          <  6:106801/149‑1 (MQ=255)                                                                                       aGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCtg                                                     >  2:20809/1‑149 (MQ=255)                                                                                             tACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGAc                                               <  8:40945/149‑1 (MQ=255)                                                                                               cAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCt                                             >  4:122373/1‑149 (MQ=255)                                                                                                 gTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGgtgtg                                                                                                      >  4:264936/1‑90 (MQ=255)                                                                                                 gTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGgtgtg                                                                                                      <  3:264936/90‑1 (MQ=255)                                                                                                 gTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTgg                                           <  5:54057/149‑1 (MQ=255)                                                                                                     gtcgATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTg                                       <  1:20809/149‑1 (MQ=255)                                                                                                       cgATGGCGACTGCGAGGTGGATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTgg                                      >  7:28011/1‑148 (MQ=255)                                                                                                              gACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGAGGCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATAccc                               >  1:237367/1‑149 (MQ=255)                                                                                                                    gAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtc                          >  8:233866/1‑147 (MQ=255)                                                                                                                    gAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtc                          <  7:233866/147‑1 (MQ=255)                                                                                                                     aGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtcggt                       <  2:237367/149‑1 (MQ=255)                                                                                                                       gTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCcggtcggt                       >  3:278832/1‑147 (MQ=255)                                                                                                                                     gctggcCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGTCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCtgtg       <  3:110514/149‑1 (MQ=255)                                                                                                                                     gctggcCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCtgtg       <  1:112501/149‑1 (MQ=255)                                                                                                                                       tggcCACGGCGCAGGCTTTTCTTGA‑GCAGCGACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGc            >  1:28479/1‑143 (MQ=255)                                                                                                                                       tggcCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGc            <  2:28479/142‑1 (MQ=255)                                                                                                                                         gcCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCcgccgtggccagccagctggcattcacctcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggc                                 <  5:288927‑M2/119‑88 (MQ=255)                                                                                                                                         gcCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCcgccgtggccagccagctggcattcacctcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggc                                 >  6:288927‑M2/1‑32 (MQ=255)                                                                                                                                          ccACGGCGgggtgctgctcaagaaaagcctgcgccgtggccagccagctggcattcacctcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcg    <  7:242500‑M1/149‑142 (MQ=255)                                                                                                                                          ccACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCcgccgtggccagccagctggcattcacctcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcg  <  7:117853‑M2/149‑119 (MQ=255)                                                                                                                                           cACGGCGgggtgctgctcaagaaaagcctgcgccgtggccagccagctggcattcacctcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcgg   <  1:80561‑M1/149‑143 (MQ=255)                                                                                                                                           cACGGCGgggtgctgctcaagaaaagcctgcgccgtggccagccagctggcattcacctcgcagtcgccatcgacgaactgtaccagctgcatcgatggcaacaggcgctgcaaggcggcaaaaccttcattgcgggcgcgtgcggcgg   <  2:112501‑M1/149‑143 (MQ=255)                                                                                                                                              ggCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTAc                                                              >  2:165543/1‑85 (MQ=255)                                                                                                                                              ggCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTAc                                                              <  1:165543/85‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                GGCGCTGGACATGAGTATCCCGTTCACCGCCGCACGCGCCCGCAATGAAGGTTTTGCCGCCTTGCAGCGCCTGTTGCCATCGATGCAGCTGGTACAGTTCGTCGATGGCGACTGCGAGGTGAATGCCAGCTGGCTGGCCACGGCGCAGGCTTTTCTTGA‑GCAGC‑ACCCCGCCGTGGCAGTGGTGTGTGGTCGCCGGCGTGAGCGCTTCCCGCAGCGTTCGGTGTACAACTTGCTGTGCGACCTGGAGTGGGATACCCCGGTCGGTGAGGCCAAGGCCTGTGGCGGC  >  NC_002947/3552508‑3552793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.