New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3652862 = | 46 (0.930) | 9 (0.190) | 6/244 | NT | 16.7% | coding (748/1320 nt) | PP_3218 | NtaA/SnaA/SoxA family monooxygenase |
? | NC_002947 | 3652899 = | 46 (0.980) | coding (785/1320 nt) | PP_3218 | NtaA/SnaA/SoxA family monooxygenase |
GGCCCGCTCAACATCCAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGACCACAGTT > NC_002947/3652715‑3653003 | ggCCCGCTCAACATCCAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTAcc < 7:299505/148‑1 (MQ=255) agccgaagttgcgcccgaattccttcaacgccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGa > 2:30674‑M1/145‑149 (MQ=255) gCTCAACATCCAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACa < 8:30967/149‑1 (MQ=255) cAACATCCAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGCGAGATTCCGAACAAGCCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATc > 6:51591/1‑148 (MQ=255) aTCCAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAgcg > 7:121261/1‑149 (MQ=255) ccAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAgcgcc > 5:210093/1‑149 (MQ=255) aGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAgcgccgc < 1:142678/149‑1 (MQ=255) aattccttcaacgccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGcgccgcgccg < 4:149901‑M1/22‑1 (MQ=255) aattccttcaacgccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGcgccgcgccg < 2:120516‑M1/22‑1 (MQ=255) tCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCgccgcgccgc > 1:128961/1‑149 (MQ=255) cAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCt < 2:42432/149‑1 (MQ=255) ggggCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTgg < 5:109286/149‑1 (MQ=255) gccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtc > 4:26668‑M1/116‑116 (MQ=255) gccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtc < 3:26668‑M1/1‑1 (MQ=255) gccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACC‑CAGGCGCCGCGCCGCGCGCCTg < 8:931‑M1/29‑1 (MQ=255) gccagttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACC‑CAGGCGCCGCGCCGCGCGCCTg > 7:931‑M1/116‑144 (MQ=255) gttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGa > 1:120516‑M1/112‑149 (MQ=255) gttcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGa > 3:149901‑M1/112‑149 (MQ=255) cGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGAc < 5:9507/149‑1 (MQ=255) tcgaaactgtggtcggcctgatggtaatggcgctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGAc > 6:206243‑M1/110‑148 (MQ=255) ttCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAg > 4:191900/1‑147 (MQ=255) ccAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAg < 8:121261/145‑1 (MQ=255) ccAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAg < 7:189089/148‑1 (MQ=255) cAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGtt < 6:210093/149‑1 (MQ=255) cAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGt < 1:64069/148‑1 (MQ=255) aGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTg > 8:216598/1‑149 (MQ=255) ggcgggcgATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGc < 7:216598/149‑1 (MQ=255) gcgggcgATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCCCGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCt > 7:193333/1‑149 (MQ=255) gcgATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACACCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTa < 2:44373/149‑1 (MQ=255) gATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTAtt < 6:316064/149‑1 (MQ=255) ttCCGAACAAGGCCGAGCGCTCGGGGTCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGc < 2:253278/149‑1 (MQ=255) cAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGgcgc < 2:128961/149‑1 (MQ=255) aGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCgg < 3:191900/149‑1 (MQ=255) ggCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGga < 5:51591/149‑1 (MQ=255) ctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGAc > 5:25736‑M1/78‑116 (MQ=255) ctcgatctcacgggcgtgggcgtcgttgtcacccacgtagatctccgcgccgggcaataccagcaactgctccgggtCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGAc < 6:25736‑M1/39‑1 (MQ=255) gAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATc > 2:240689/1‑149 (MQ=255) gAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATc > 4:265153/1‑149 (MQ=255) tCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTg > 8:276830/1‑149 (MQ=255) tCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGAGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTg > 3:84042/1‑149 (MQ=255) ccgccACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTAtt < 8:136547/121‑1 (MQ=255) ccgccACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTAtt > 7:136547/1‑121 (MQ=255) gccACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACaa > 3:44646/1‑149 (MQ=255) cGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAacgac < 4:44646/149‑1 (MQ=255) aTGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGacgccc < 3:119653/147‑1 (MQ=255) gtggtgTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGCCCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGacgcccacgc > 1:34723/1‑149 (MQ=255) gtgtTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGacgcccacgccc < 7:276830/148‑1 (MQ=255) ttCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGAGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTg < 4:84042/148‑1 (MQ=255) aCCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACTCCCGTgaga < 3:265153/148‑1 (MQ=255) cccACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGAt < 5:221885/112‑1 (MQ=255) cccACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGAt > 6:221885/1‑112 (MQ=255) cccACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGt > 1:195893/1‑143 (MQ=255) ccACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATc > 2:53480/1‑148 (MQ=255) gCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAgg > 6:267572/1‑149 (MQ=255) ggCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGa > 1:161435/1‑149 (MQ=255) ggCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGACcaca < 1:53480/149‑1 (MQ=255) cTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGCCCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGAGAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGACCACAGtt > 7:129776/1‑149 (MQ=255) cTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGACcac < 7:221199/145‑1 (MQ=255) cTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGACcac > 8:221199/1‑145 (MQ=255) cTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGc < 7:122522/135‑1 (MQ=255) cTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGc > 8:122522/1‑135 (MQ=255) | GGCCCGCTCAACATCCAGCGCTCGCCCCAGGGGCAGCCGGTGATCTTCCAGGCGGGCGATTCCGAACAAGGCCGAGCGCTCGGGGCCGCCACGGCTGATGTGGTGTTCACCCACGCCGCCAGCATCGAGCAGGGCCAGGCCTTCTACCGCGACATCAAGCGCCGCGCCGCGCGCCTGGGTCGCGACCCGGAGCAGTTGCTGGTATTGCCCGGCGCGGAGATCTACGTGGGTGACAACGACGCCCACGCCCGTGAGATCGAGCGCCATTACCATCAGGCCGACCACAGTT > NC_002947/3652715‑3653003 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |