| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3947913 = | 27 (0.550) | 5 (0.130) | 5/200 | NT | 18.2% | coding (136/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | 3947998 = | 24 (0.620) | coding (51/1797 nt) | PP_3483 | type II secretion system protein | |||||
AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGG > NC_002947/3947766‑3948050 | agggcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgt < 3:199288‑M1/1‑1 (MQ=255) gCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGttcttc > 4:224149/1‑149 (MQ=255) tCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGc < 3:224149/149‑1 (MQ=255) ggCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATg > 5:304913/1‑149 (MQ=255) ccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGccc < 1:59418/149‑1 (MQ=255) ccGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCca < 3:58009/149‑1 (MQ=255) acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaacgccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCca < 1:257860‑M1/24‑1 (MQ=255) acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGc > 4:144104‑M1/124‑142 (MQ=255) acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCca > 5:18623‑M1/124‑147 (MQ=255) acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCAAGCCCGc < 3:144104‑M1/19‑1 (MQ=255) aggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCCTGCCCGCGCCCCCAgg < 5:192639‑M1/28‑1 (MQ=255) tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAg < 6:244430/141‑1 (MQ=255) tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAg > 5:244430/1‑141 (MQ=255) aGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATca > 8:179955/1‑120 (MQ=255) gCAGTCGTGCTGGCGCTCGTGAGTGGCTTGCAGACGGGCCTGGGCCTGGAGGTCGCGGGTGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGGATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa < 5:52181/149‑1 (MQ=255) ctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg < 6:136296‑M1/64‑1 (MQ=255) ctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa > 5:136296‑M1/84‑149 (MQ=255) cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGTAGc > 3:41154‑M1/81‑148 (MQ=255) gcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacaTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg > 8:228739‑M1/75‑144 (MQ=255) gcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacaTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg < 7:228739‑M1/70‑1 (MQ=255) gTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGAGAAGACGt > 7:286932/1‑149 (MQ=255) ggCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg < 6:304913/149‑1 (MQ=255) ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCCCGGGACATCACAGGGCTGTGGGCGGCATACATCCTGTGGGCGCGGGCATGCCCGCGAAGCCGTCGGTg > 7:262826/1‑149 (MQ=38) cAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCGGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGGCGGTGccg > 6:192639/1‑147 (MQ=255) aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACCTCGGTGCAg > 1:33507/1‑149 (MQ=255) gggCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCttt > 2:68029/1‑149 (MQ=255) ccTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa > 5:155308/1‑149 (MQ=255) ccAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGc < 7:276956/115‑1 (MQ=255) ccAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGc > 8:276956/1‑115 (MQ=255) ccAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg < 5:223056/141‑1 (MQ=255) ccAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCATTg > 6:223056/1‑141 (MQ=255) gtaggTCGCGGGGGT‑AGGCTTAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCTTACATGCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg < 2:33507/147‑1 (MQ=255) gaggTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCa > 3:226591/1‑130 (MQ=255) gcgGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCGGTGGGCGGCATACATCCTGTGGGCGCGGGCCTGCCCGCGACGCCGGCGGTGCAGGCGTTGCAGATTCCGGGGTTGCAt > 6:114697/1‑149 (MQ=255) gggggT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGGATGCCGGCTACCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg < 8:218855/97‑1 (MQ=255) gggggT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg > 7:218855/1‑97 (MQ=255) gT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACCGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCg < 4:51748/145‑1 (MQ=255) gT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCg > 3:51748/1‑145 (MQ=255) tttGCTGGGTTCTTCGCGGGCATGCCCGGTCCCACTGGTACATCACTGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATgg < 6:155308/148‑1 (MQ=255) | AATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGG > NC_002947/3947766‑3948050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |