New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947913 =	27 (0.550)	5 (0.130)	5/200	NT	18.2%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	24 (0.620)					coding (51/1797 nt)	PP_3483	type II secretion system protein

GTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCT  >  NC_002947/3947852‑3948145                                                                                                                                                    |                                                                                                                                                    gTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGAGAAGACGt                                                                                                                                                   >  7:286932/1‑149 (MQ=255)   ggCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                                                                                                                 <  6:304913/149‑1 (MQ=255)      ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCCCGGGACATCACAGGGCTGTGGGCGGCATACATCCTGTGGGCGCGGGCATGCCCGCGAAGCCGTCGGTg                                                                                                                                              >  7:262826/1‑149 (MQ=38)         cAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCGGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGGCGGTGccg                                                                                                                                           >  6:192639/1‑147 (MQ=255)          aGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACCTCGGTGCAg                                                                                                                                           >  1:33507/1‑149 (MQ=255)              gggCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCttt                                                                                                                                      >  2:68029/1‑149 (MQ=255)                 ccTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa                                                                                                                                   >  5:155308/1‑149 (MQ=255)                       ccAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg                                                                                                                                     <  5:223056/141‑1 (MQ=255)                       ccAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCATTg                                                                                                                                     >  6:223056/1‑141 (MQ=255)                          gtaggTCGCGGGGGT‑AGGCTTAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCTTACATGCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                          <  2:33507/147‑1 (MQ=255)                           gaggTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCa                                                                                                                                            >  3:226591/1‑130 (MQ=255)                                 gcgGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCGGTGGGCGGCATACATCCTGTGGGCGCGGGCCTGCCCGCGACGCCGGCGGTGCAGGCGTTGCAGATTCCGGGGTTGCAt                                                                                                                   >  6:114697/1‑149 (MQ=255)                                       gT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACCGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCg                                                                                                                 <  4:51748/145‑1 (MQ=255)                                       gT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCg                                                                                                                 >  3:51748/1‑145 (MQ=255)                                                     tttGCTGGGTTCTTCGCGGGCATGCCCGGTCCCACTGGTACATCACTGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATgg                                                                                                 <  6:155308/148‑1 (MQ=255)                                                                              ccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaTGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgc                                                                            <  7:228739‑M2/74‑1 (MQ=255)                                                                              ccgctcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaTGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgc                                                                            >  8:228739‑M2/71‑144 (MQ=255)                                                                               CGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGAc                                                                                         <  2:279703‑M1/130‑1 (MQ=255)                                                                               CGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGAc                                                                                         >  1:279703‑M1/1‑130 (MQ=255)                                                                                gctaccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCg                                                                      >  3:41154‑M2/69‑148 (MQ=255)                                                                                  tcccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAg                                                                   >  5:136296‑M2/67‑149 (MQ=255)                                                                                   CCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg                                                                  <  8:11122‑M1/149‑1 (MQ=255)                                                                                    ccacaggatgtatgcagcccacagacctgtgatgtacctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAg                                                                   <  6:136296‑M2/83‑1 (MQ=255)                                                                                    ccACAGCTACATCACAGGTCTGTGGACTGCATACATCCAGTGGGAGCGGGCATGCCCGCCAAGACGTCGGAGCACGCTTTGCAGATTCAGGCGTTGCATCGAATGCTACTGGCATTACCTACTACTCCGc                                                                                    >  4:182469/1‑130 (MQ=255)                                                                                    CCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGc                                                                                    >  3:182469‑M1/1‑130 (MQ=255)                                                                                     CACAGGTTCATCACTGGTCTGTGGGCTGCATACATCGTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTGCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc                                                                          >  8:168402‑M1/1‑139 (MQ=255)                                                                                     CACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATTCTTCTGGCATGGCCTGCGACTCCGCTAAGGGgcgc                                                                          <  7:168402‑M1/139‑1 (MQ=255)                                                                                     CACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggct                                                                <  2:5484‑M1/149‑1 (MQ=255)                                                                                      ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctg                                                               <  3:161523‑M1/149‑1 (MQ=255)                                                                                      ACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGCGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggctg                                                               <  2:257860‑M1/149‑1 (MQ=255)                                                                                          gcaCATCACCGGTCGGTGGGCTGCAGACATCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTc                                                           <  8:286932/147‑1 (MQ=255)                                                                                             cATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGACGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGc                                                        >  1:291020/1‑149 (MQ=255)                                                                                                  caGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg                                                   <  5:14774/149‑1 (MQ=255)                                                                                                  caGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAggg                                                   >  6:14774/1‑149 (MQ=255)                                                                                                          tgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTcc                                                                                      >  1:298281/1‑106 (MQ=255)                                                                                                          tgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTcc                                                                                      <  2:298281/106‑1 (MQ=255)                                                                                                            ggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                                               >  5:303929/1‑111 (MQ=255)                                                                                                            ggCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAgg                                                                               <  6:303929/111‑1 (MQ=255)                                                                                                              cTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgccg                                       >  2:238418/1‑149 (MQ=255)                                                                                                                 cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGcgccgc                                      <  1:68029/147‑1 (MQ=255)                                                                                                                     cATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTc                                 <  7:11122/148‑1 (MQ=255)                                                                                                                      aTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTccc                               >  4:199288/1‑149 (MQ=255)                                                                                                                        cctgggggcgcgggcaggcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt                             <  5:192639‑M2/121‑1 (MQ=255)                                                                                                                            tgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgt                           >  5:18623‑M2/25‑147 (MQ=255)                                                                                                                            tgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGCGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgt                           <  1:257860‑M2/123‑1 (MQ=255)                                                                                                                                 gcgggcttgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgt                           <  3:144104‑M2/123‑1 (MQ=255)                                                                                                                                 gcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCtgt                           >  4:144104‑M2/20‑142 (MQ=255)                                                                                                                                                   aCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCt  <  3:199288‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGT‑AGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCT  >  NC_002947/3947852‑3948145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.