New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4337054 | 47 (0.950) | 3 (0.060) | 3/244 | NT | 6.3% | coding (161/885 nt) | PP_3811 | LysR family transcriptional regulator |
? | NC_002947 | = 4337105 | 44 (0.940) | coding (110/885 nt) | PP_3811 | LysR family transcriptional regulator |
CAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTC > NC_002947/4336908‑4337202 | cAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCgg < 5:191534/149‑1 (MQ=255) aaaCGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCAGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGAGGCGTGGCATCGAGGCGCCggg > 5:120814/1‑149 (MQ=255) gACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGa < 2:33127/149‑1 (MQ=255) cggcgCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGt < 3:84001/149‑1 (MQ=255) cggcgCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGt > 6:191771/1‑149 (MQ=255) cggcgCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGt < 1:9916/149‑1 (MQ=255) cgcTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGc < 1:306433/149‑1 (MQ=255) gCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGgc > 5:259910/1‑149 (MQ=255) gcgcAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGct < 6:259910/149‑1 (MQ=255) cgcAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGctc < 7:68789/149‑1 (MQ=255) gcAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGctcc > 8:25087/1‑149 (MQ=255) cTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCt > 6:144790/1‑149 (MQ=255) cTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCt > 3:128414/1‑149 (MQ=255) tGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCtgatgcagcttgaggagcgcctgggcgtgcgcctgctcaaccgctccacccg > 3:240831‑M1/1‑97 (MQ=255) gCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCtgatgcagcttgaggagcgcctgggcgtgcgcctgctcaaccgctccacccggc < 4:240831‑M1/149‑55 (MQ=255) cGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgc > 4:100284‑M2/1‑144 (MQ=255) cGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgc < 2:184677‑M2/149‑6 (MQ=255) gCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAg < 5:193939/111‑1 (MQ=255) gCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAg > 6:193939/1‑111 (MQ=255) tGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGGCCCAGTGGCGTGGCATCGAGGCGCCtgatgcagcttgaggagcgcctgggcgtgcgcctgctcaaccgctccacccggcgcctcga < 4:199724‑M1/148‑62 (MQ=255) gtgtTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGAcc < 1:184677/148‑1 (MQ=255) gtgtTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGAcc < 5:191771/148‑1 (MQ=255) ttCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGAtt > 2:156231/1‑149 (MQ=255) cGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTg < 1:156231/148‑1 (MQ=255) cGACCTGCTGCACTTCAACCAGCAGGCGCAGCGCCGACTGCTAGAAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGCAGCGGATGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCAGCATCAGCCGCCGACTGACCGa > 1:160837/1‑145 (MQ=255) ctgcACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGa < 7:25087/147‑1 (MQ=255) ctgcACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGAc < 6:229874/148‑1 (MQ=255) ctgcACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGAc > 5:229874/1‑148 (MQ=255) gaaCTTCACCCAGCAGGCGCAGGGCCGACTGATAGTAGTGCTGCCCCAGTGGCGTGGCATCGATGCGCCGGGTGGAGCGGTTGAGAAGGCGAACTCCCAGGCGCTCCTCAAGCTGCAACAGGCTCCGACTGACCGATTGATTCGACAtt > 8:197347/3‑148 (MQ=255) aCTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc > 7:133962/1‑149 (MQ=255) ttCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc > 6:128037/1‑147 (MQ=255) agcagGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc < 5:128037/149‑1 (MQ=255) cagGCGCAGGGCCGACTGGTAGTAGTGCTGCCACAGTGGCGTGGCATAGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCCCGCCCAGGCGCTCCTCAAGCTTCATCAGGAGCCGAAAGACCGATTGCTTGGACATGCCCAGACGGTcgg > 1:194023/1‑149 (MQ=255) cAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc < 6:64848/141‑1 (MQ=255) cAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc > 5:64848/1‑141 (MQ=255) gggCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCg < 4:128414/149‑1 (MQ=255) gggCCGACTGGTAGTAGTGCTGCCCCAGAGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCg < 6:120814/149‑1 (MQ=255) cGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGa < 3:207271/149‑1 (MQ=255) gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTg > 4:54277/1‑108 (MQ=255) gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTg < 3:54277/108‑1 (MQ=255) gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTAc > 1:234159/1‑149 (MQ=255) gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTAc < 8:133962/149‑1 (MQ=255) agtagtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc > 4:77157/1‑118 (MQ=255) agtagtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc < 3:77157/118‑1 (MQ=255) gtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACg > 8:57233/1‑120 (MQ=255) gtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACg < 7:57233/120‑1 (MQ=255) ccccAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCa > 5:93568/1‑149 (MQ=255) cccAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCAc > 3:6412/1‑149 (MQ=255) cAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTcggc < 2:26066/117‑1 (MQ=255) cAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTcggc > 1:26066/1‑117 (MQ=255) tggcgtggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTggg > 4:223601/1‑149 (MQ=255) aTCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATcc > 1:128021/1‑149 (MQ=255) tCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgcctcgatgccacgccactgggccagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgaca < 4:199724‑M2/148‑88 (MQ=255) tCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACt < 6:301406/119‑1 (MQ=255) tCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCAAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACt > 5:301406/1‑119 (MQ=255) gcgcCtgatgcagcttgaggagcgcctgggcgtgcgcctgctcaaccgctccacccggcgcctcgatgccacgccactggggcagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgacatcagcg > 4:100284‑M1/1‑5 (MQ=255) gcgcCtgatgcagcttgaggagcgcctgggcgtgcgcctgctcaaccgctccacccggcgcctcgatgccacgccactggggcagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgacatcagcg < 2:184677‑M1/149‑145 (MQ=255) gcCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgcctcgatgccacgccactggggcagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgacatcagcggc < 4:240831‑M2/149‑96 (MQ=255) cGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgcctcgatgccacgccactggggcagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgacatcagcggcca > 3:240831‑M2/1‑52 (MQ=255) cGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTc < 5:144790/149‑1 (MQ=255) | CAAACGACAGCGGCGCGCTCAGGCGCAAGGTGCCGCGCAGGACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTC > NC_002947/4336908‑4337202 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |