New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4337054	47 (0.950)	3 (0.060)	3/244	NT	6.3%	coding (161/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337105	44 (0.940)					coding (110/885 nt)	PP_3811	LysR family transcriptional regulator

CGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGC  >  NC_002947/4336962‑4337250                                                                                                                                                |                                                                                                                                                  cGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgc                                                                                                                                              >  4:100284‑M2/1‑144 (MQ=255) cGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgc                                                                                                                                              <  2:184677‑M2/149‑6 (MQ=255)           gtgtTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGAcc                                                                                                                                     <  1:184677/148‑1 (MQ=255)           gtgtTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGAcc                                                                                                                                     <  5:191771/148‑1 (MQ=255)              ttCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGAtt                                                                                                                                 >  2:156231/1‑149 (MQ=255)                cGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTg                                                                                                                                <  1:156231/148‑1 (MQ=255)                cGACCTGCTGCACTTCAACCAGCAGGCGCAGCGCCGACTGCTAGAAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGCAGCGGATGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCAGCATCAGCCGCCGACTGACCGa                                                                                                                                   >  1:160837/1‑145 (MQ=255)                       ctgcACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGa                                                                                                                          <  7:25087/147‑1 (MQ=255)                       ctgcACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGAc                                                                                                                         <  6:229874/148‑1 (MQ=255)                       ctgcACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGAc                                                                                                                         >  5:229874/1‑148 (MQ=255)                         gaaCTTCACCCAGCAGGCGCAGGGCCGACTGATAGTAGTGCTGCCCCAGTGGCGTGGCATCGATGCGCCGGGTGGAGCGGTTGAGAAGGCGAACTCCCAGGCGCTCCTCAAGCTGCAACAGGCTCCGACTGACCGATTGATTCGACAtt                                                                                                                      >  8:197347/3‑148 (MQ=255)                           aCTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                    >  7:133962/1‑149 (MQ=255)                             ttCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                    >  6:128037/1‑147 (MQ=255)                                    agcagGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc                                                                                                           <  5:128037/149‑1 (MQ=255)                                      cagGCGCAGGGCCGACTGGTAGTAGTGCTGCCACAGTGGCGTGGCATAGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCCCGCCCAGGCGCTCCTCAAGCTTCATCAGGAGCCGAAAGACCGATTGCTTGGACATGCCCAGACGGTcgg                                                                                                         >  1:194023/1‑149 (MQ=255)                                            cAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc                                                                                                           >  5:64848/1‑141 (MQ=255)                                            cAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc                                                                                                           <  6:64848/141‑1 (MQ=255)                                              gggCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCg                                                                                                 <  4:128414/149‑1 (MQ=255)                                              gggCCGACTGGTAGTAGTGCTGCCCCAGAGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCg                                                                                                 <  6:120814/149‑1 (MQ=255)                                                  cGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGa                                                                                             <  3:207271/149‑1 (MQ=255)                                                        gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTg                                                                                                                                <  3:54277/108‑1 (MQ=255)                                                        gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTg                                                                                                                                >  4:54277/1‑108 (MQ=255)                                                        gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTAc                                                                                       >  1:234159/1‑149 (MQ=255)                                                        gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTAc                                                                                       <  8:133962/149‑1 (MQ=255)                                                          agtagtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                    <  3:77157/118‑1 (MQ=255)                                                          agtagtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                    >  4:77157/1‑118 (MQ=255)                                                              gtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACg                                                                                                              >  8:57233/1‑120 (MQ=255)                                                              gtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACg                                                                                                              <  7:57233/120‑1 (MQ=255)                                                                    ccccAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCa                                                                           >  5:93568/1‑149 (MQ=255)                                                                     cccAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCAc                                                                          >  3:6412/1‑149 (MQ=255)                                                                       cAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTcggc                                                                                                        <  2:26066/117‑1 (MQ=255)                                                                       cAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTcggc                                                                                                        >  1:26066/1‑117 (MQ=255)                                                                          tggcgtggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTggg                                                                     >  4:223601/1‑149 (MQ=255)                                                                                   aTCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATcc                                                            >  1:128021/1‑149 (MQ=255)                                                                                    tCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgcctcgatgccacgccactgggccagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgaca                                                            <  4:199724‑M2/148‑88 (MQ=255)                                                                                    tCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACt                                                                                         <  6:301406/119‑1 (MQ=255)                                                                                    tCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCAAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACt                                                                                         >  5:301406/1‑119 (MQ=255)                                                                                           gcCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgcctcgatgccacgccactggggcagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgacatcagcggc                                                    <  4:240831‑M2/149‑96 (MQ=255)                                                                                             cGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAggcgcctcgatgccacgccactggggcagcactactaccagtcggccctgcgcctgctgggtgaagtgcagcaggtcgaacacgacatcagcggcca                                                  >  3:240831‑M2/1‑52 (MQ=255)                                                                                             cGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTc                                                  <  5:144790/149‑1 (MQ=255)                                                                                              gggTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCg                                                 <  2:234159/149‑1 (MQ=255)                                                                                                   gAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAACCTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAgg                                            >  4:268784/1‑149 (MQ=255)                                                                                                        gTTGAGCAGGCGCACGCCCTGGGGCTCCTCAATGTTGATCAGGCGCCGACTGACCGTTTGCTTGGACTTGCCCAGACGGTCTGCGGCAGCGGTGAAACTAGCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTATGGGTTCa                                       <  2:160837/149‑1 (MQ=255)                                                                                                               aGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCtt                                <  3:223601/149‑1 (MQ=255)                                                                                                                 gcgcACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTg                                    >  7:245617/1‑143 (MQ=255)                                                                                                                 gcgcACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTg                                    <  8:245617/143‑1 (MQ=255)                                                                                                                      cGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAACCTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAg                         <  3:268784/149‑1 (MQ=255)                                                                                                                                   ctcAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCaaa             >  6:58910/1‑148 (MQ=255)                                                                                                                                      aaGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACt         >  4:58864/1‑149 (MQ=255)                                                                                                                                             aTCAGGCGCCGACTGACCGATTTCTTGGACATGCCCAGACGGTCGGCGGCATCGGTGAAACTACCTGCCTACATCACCTGGGCAAAGATCCGCATGTCTTCTTAATTGTTCATTGTCTTGCTCTAGTTGACAGTCAAACACTTTATAGc  <  7:197347/149‑1 (MQ=255)                                                                                                                                             aTCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGc  >  1:128524/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  CGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGC  >  NC_002947/4336962‑4337250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.