New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4452248	41 (0.830)	3 (0.060)	3/248	NT	7.7%	coding (1852/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	= 4452306	32 (0.670)					coding (1910/3564 nt)	nicB	nicotinate dehydrogenase subunit B

CATACCCGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCGGGTACTCAAGGAGCAGGTCAGTTTCGAGGA  >  NC_002947/4452110‑4452396                                                                                                                                            |                                                                                                                                                     cATACCCGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACggg                                                                                                                                            <  7:101985/149‑1 (MQ=255) cATACCCGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCCGCGCACggg                                                                                                                                            >  4:32193/1‑149 (MQ=255)     cccGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGaa                                                                                                                                        <  4:9504/149‑1 (MQ=255)      ccGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGGAGTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGaa                                                                                                                                        >  1:228349/1‑149 (MQ=255)       cGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGt                                                                                                                                      >  3:174562/1‑149 (MQ=255)                  gACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGaa                                                                                                                                        >  4:97795/1‑136 (MQ=255)                  gACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGaa                                                                                                                                        <  3:97795/136‑1 (MQ=255)                      caGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCgt                                                                                                                       <  3:265943/149‑1 (MQ=255)                       aGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGGTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCcgcggg                                                                                                                      <  6:153941/149‑3 (MQ=255)                         gCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCgtggt                                                                                                                    >  5:24766/1‑149 (MQ=255)                           cGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGa                                                                                                                  >  8:43980/1‑149 (MQ=255)                             aaGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGTCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATc                                                                                                                >  6:233543/1‑149 (MQ=255)                             aaGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATc                                                                                                                >  4:79328/1‑149 (MQ=255)                                gTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCatcatcccggcatcgtggccgatcaccacgcgggtgacggc                                                                                                             <  4:206692‑M1/149‑42 (MQ=255)                                      tgctgcGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGAt                                                                                                       <  5:69114/149‑1 (MQ=255)                                        ctgcGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCg                                                                                                               <  1:22666/139‑1 (MQ=255)                                        ctgcGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCg                                                                                                               >  2:22666/1‑139 (MQ=255)                                         tgcGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTg                                                                                                                                     <  4:151676/116‑1 (MQ=255)                                         tgcGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTg                                                                                                                                     >  3:151676/1‑116 (MQ=255)                                          gcgcGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCg                                                                                                   >  8:222231/1‑149 (MQ=255)                                          gcgcGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCg                                                                                                   >  2:208078/1‑149 (MQ=255)                                            gcgGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCgg                                                                                                  >  8:102261/1‑148 (MQ=255)                                                  ggg‑gTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCgg                                                                                                                                                    <  7:18290/92‑1 (MQ=255)                                                  ggg‑gTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCgg                                                                                                                                                    >  8:18290/1‑92 (MQ=255)                                                  ggg‑gTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATg                                                                                           >  2:228349‑M2/1‑148 (MQ=255)                                                  ggg‑gTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATg                                                                                           <  6:243683‑M2/149‑2 (MQ=255)                                                           gCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAAccc                                                                                   >  6:158987/1‑149 (MQ=255)                                                             cTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCatcatcccggcatcgtggccgatcaccacgcgggtgacggccacttcgcccgtgcgccggtccact                                                                                    <  8:182238‑M1/146‑67 (MQ=255)                                                             cTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCatcatcccggcatcgtggccgatcaccacgcgggtgacggccacttcgcccgtgcgccggtccact                                                                                    >  7:182238‑M1/1‑80 (MQ=255)                                                             cTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAAcccc                                                                                  >  6:205402/1‑148 (MQ=255)                                                                tGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAgg                                                                              <  7:43980/149‑1 (MQ=255)                                                                    cgcTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGgtgt                                                                          <  5:205402/149‑1 (MQ=255)                                                                             cacaGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCAc                                                                   >  1:302963/1‑147 (MQ=255)                                                                             cacaGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCAc                                                                   >  1:289405/1‑147 (MQ=255)                                                                                aGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCAc                                                                   >  7:49901/1‑144 (MQ=255)                                                                                    aaTTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCAc                                                          <  3:79328/149‑1 (MQ=255)                                                                                     aTTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCTCGGTCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACg                                                         <  5:233543/149‑1 (MQ=255)                                                                                     aTTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACg                                                         <  5:158987/149‑1 (MQ=255)                                                                                     aTTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACg                                                         <  8:130924/149‑1 (MQ=255)                                                                                     aTTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACg                                                         <  1:208078/149‑1 (MQ=255)                                                                                        tCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGt                                                       <  5:243683/148‑1 (MQ=255)                                                                                           cGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCgtgg                                                                                                                     <  5:135942/83‑1 (MQ=255)                                                                                           cGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCgtgg                                                                                                                     >  6:135942/1‑83 (MQ=255)                                                                                                               cAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCgg                               <  3:32193/149‑1 (MQ=255)                                                                                                                aGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCggg                              <  4:174562/149‑1 (MQ=255)                                                                                                                   cTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCGGGTAc                           <  8:49901/149‑1 (MQ=255)                                                                                                                        tGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCGGGTACTCAAg                      <  6:160369/149‑1 (MQ=255)                                                                                                                          gCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCGGGTACTCAAgg                     <  7:222231/148‑1 (MQ=255)                                                                                                                                     aGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATggtccactgcgacatcagccacccaggctgcccaggccgcgccgaagccgggaaatttactgtggatatagcgcgcatag            >  7:182238‑M2/1‑66 (MQ=255)                                                                                                                                     aGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATggtccactgcgacatcagccacccaggctgcccaggccgcgccgaagccgggaaatttactgtggatatagcgcgcatag            <  8:182238‑M2/146‑81 (MQ=255)                                                                                                                                         gACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCGGGTACTCAAGGAGCAGGTCAGTTTCGa     <  7:144931/149‑1 (MQ=255)                                                                                                                                           ccGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGa                                                               <  7:28551/89‑1 (MQ=255)                                                                                                                                           ccGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGa                                                               >  8:28551/1‑89 (MQ=255)                                                                                                                                            catcatcccggcatcgtggccgatcaccacgcgggtgacggccacttcgcccgtgcgccggtccactgcgacatcagccacccaggctgcccaggccgcgccgaagccgggaaatttactgtggatatagcgcgcataggcaaaacccc  <  6:243683‑M1/149‑149 (MQ=255)                                                                                                                                            catcatcccggcatcgtggccgatcaccacgcgggtgacggccacttcgcccgtgcgccggtccactgcgacatcagccacccaggctgcccaggccgcgccgaagccgggaaatttactgtggatatagcgcgcataggcaaaacccc  >  2:228349‑M1/1‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                     CATACCCGGCCCATGCAGACACAGGCCGAAGGTGATGTGCTGCGCGGCCGGG‑GTTTTGCCTATGCGCGCTATATCCACAGTAAATTTCCCGGCTTCGGCGCGGCCTGGGCAGCCTGGGTGGCTGATGTCGCAGTGGACCGGCGCACGGGCGAAGTGGCCGTCACCCGCGTGGTGATCGGCCACGATGCCGGGATGATGGTCAACCCCGAGGGTGTGCGTCACCAGATCCACGGTAACGTCATCCAGTCCACCAGCCGGGTACTCAAGGAGCAGGTCAGTTTCGAGGA  >  NC_002947/4452110‑4452396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.