New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4765379 =	44 (0.890)	4 (0.090)	4/240	NT	8.0%	coding (32/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	4765420 =	51 (1.100)					coding (73/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA

ACAGGAGAACCGCGTCGCAGATTGCATTTAATTTTTCCGGTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAGCGCCTTGTTGGCCTTCGGCTCG  >  NC_002947/4765231‑4765524                                                                                                                                                     |                                                                                                                                                  cttccacgtcctgtgggctatagagcacctgcaggttcgattgcgagccgaaggccaacaaggcgctggccagcggctgggccggcacgttgaactggacctgttgggcctgggcgatcgccggcaggcccgccaggccgacggccatt                                                                                                                                                   <  2:175619‑M1/1‑1 (MQ=255)    ccacgtcctgtgggctatagagcacctgcaggttcgattgcgagcctaaggccaacaaggcgctggccagcggctgggccggcacgttgaactggacctgttgggcctgggcgatcgccggcaggcccgccaggccgacggccatTgg                                                                                                                                                 >  4:118513‑M1/146‑148 (MQ=255)        gtcctgtgggctatagagcacctgcaggtacgattgcgagccgaaggccaacaaggcgctggccagcggctgggccgccacgttgaactggacctgttgggcctgggcgatcgccggcaggcccgccaggccgacggccatTGGCGcta                                                                                                                                            <  8:199146‑M1/8‑2 (MQ=255)        aaCCGCGTCGCAGATTGCATTTAATTTTTCCGGTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCACCACGATCTGGCGCTg                                                                                                                                            >  3:230668/1‑149 (MQ=255)          ccGCGTCGCAGATTGCATTTAATTTTTCCGGTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGt                                                                                                                                          <  3:181139/149‑1 (MQ=255)                  cAGATTGCATTTAATTTTTCCGGTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTcgcc                                                                                                                                  >  2:25784/1‑149 (MQ=255)                           tttAATTTTTCCGGTTTTGGCCGATTAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGtt                                                                                                                           <  4:129870/147‑1 (MQ=255)                           tttAATTTTTCCGGTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTga                                                                                                                         >  3:129870/1‑148 (MQ=255)                                       ggTTTTGGCCGATGAGCGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAgcgc                                                                                                             <  4:68007/149‑1 (MQ=255)                                       gattgcgagccgaaggccaacaaggcgctggccagcggctgggccggcacgttgaactggacctgttgggcctgggcgatcgccggcaggcccgccaggccgacggccatTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAgcgc                                                                                                             <  4:188974‑M1/39‑1 (MQ=255)                                        gTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAgcgc                                                                                                             >  7:33441/1‑148 (MQ=255)                                            cgagccgaaggccaacaaggcgctggccagcggctgggccggcacgttgaactggacctgttgggcctgggcgatcgccggcaggcccgccaggccgacggccatTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATg                                                                                                        >  8:42802‑M1/106‑149 (MQ=255)                                             gagccgaaggccaacaaggcgctggccagcggctgggccggcacgttgaactggacctgttgggcctgggcgatcgccggcaggcccgccaggccgacggccatTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATgg                                                                                                       >  3:188974‑M1/105‑149 (MQ=255)                                                  aTGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTc                                                                                                  >  6:35486/1‑149 (MQ=255)                                                      gTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTAGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGcc                                                                                              >  5:296131/1‑149 (MQ=255)                                                          gTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGc                                                                                          >  8:190507/1‑149 (MQ=255)                                                             ccAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCgg                                                                                        <  4:92039/148‑1 (MQ=255)                                                              caatcaatAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTg                                                                                                                                            >  1:62295/1‑95 (MQ=255)                                                              caatcaatAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTg                                                                                                                                            <  2:62295/95‑1 (MQ=255)                                                                 tcaatAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTg                                                                                   >  7:39144/1‑149 (MQ=255)                                                                   aatAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGc                                                                                  <  5:35486/148‑1 (MQ=255)                                                                    atAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCg                                                                                >  3:210052/1‑149 (MQ=255)                                                                     tAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCgg                                                                               >  1:175619/1‑149 (MQ=255)                                                                       aCAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCg                                                                             <  6:296131/149‑1 (MQ=255)                                                                        cAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGa                                                                            >  7:240787/1‑149 (MQ=255)                                                                          aGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATc                                                                          >  5:157255/1‑149 (MQ=255)                                                                                     tATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGc                                                                              >  7:46074/1‑134 (MQ=255)                                                                                     tATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGc                                                                              <  8:46074/134‑1 (MQ=255)                                                                                       ttAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAAc                                                             <  4:210052/149‑1 (MQ=255)                                                                                       ttAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAAc                                                             <  8:39144/149‑1 (MQ=255)                                                                                            aTCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTc                                                        <  2:104630/149‑1 (MQ=255)                                                                                               tGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGACCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGAAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAg                                                     >  4:262060/1‑149 (MQ=255)                                                                                                gACACTCAAGGGCTTTGAAAAAGTGCCAACAAAACGTATTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGATAGTTGCGCATTGTAGCGCCAATGGCCGTCGGCCTGGCGGGCAACCCGGCGATCCCCCACGCCCAACAGGACCaa                                                     >  7:199146/1‑147 (MQ=255)                                                                                                 acacTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAg                                                     <  8:33441/147‑1 (MQ=255)                                                                                                      cAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAg                                                           >  1:305358/1‑136 (MQ=255)                                                                                                      cAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAg                                                           <  2:305358/136‑1 (MQ=255)                                                                                                       aaGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAAc                                               <  8:240787/147‑1 (MQ=255)                                                                                                         gggCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGc                                           <  7:190507/149‑1 (MQ=255)                                                                                                            cTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCgg                                        >  1:56586/1‑149 (MQ=255)                                                                                                             tttGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGcc                                                                                 <  6:231226/107‑1 (MQ=255)                                                                                                             tttGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGcc                                                                                 >  5:231226/1‑107 (MQ=255)                                                                                                                    gatcgccggcaggcccgccaggccgacggccatTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTc                                                                                                  >  1:305985‑M1/34‑83 (MQ=255)                                                                                                                          cAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGt                                                    >  3:174024/1‑123 (MQ=255)                                                                                                                          cAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGt                                                    <  4:174024/123‑1 (MQ=255)                                                                                                                          cAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGcc                          >  5:255661/1‑149 (MQ=255)                                                                                                                          cAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGc                           >  4:230304/1‑148 (MQ=255)                                                                                                                             cacaACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAgc                       <  2:56586/149‑1 (MQ=255)                                                                                                                                aaagTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAgcgc                     >  1:171279/4‑148 (MQ=255)                                                                                                                                    tCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAGCGCCttgt                <  2:171279/149‑1 (MQ=255)                                                                                                                                        cGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAGCGCCttgttg              <  3:262060/147‑1 (MQ=255)                                                                                                                                            cacACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAAAGGCCGTCGGCCTGGCGGGCCTGCAGGCGAACGCCCAGGCCCAACAGGTCCAGTTCAACGTGCAGGACCAGCCCCTGGCCATCGCCTTGTTGGCCTTc        >  1:10087/3‑149 (MQ=255)                                                                                                                                                   tctGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAGCGCCTTGTTGGCCTTCCGCTCg  >  7:211033/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ACAGGAGAACCGCGTCGCAGATTGCATTTAATTTTTCCGGTTTTGGCCGATGAGTGCGTCCCAATCAATAACAAGAATTAATACTATTAACATCTGACACTCAAGGGCTTTGAAAAAATGCCAACACAACGTCTTCGCCCCCACGCTCTGGCGCTGGTCATTCGCCGCTCGTTGCGCCTTGCAGCGCCAATGGCCGTCGGCCTGGCGGGCCTGCCGGCGATCGCCCAGGCCCAACAGGTCCAGTTCAACGTGCCGGCCCAGCCGCTGGCCAGCGCCTTGTTGGCCTTCGGCTCG  >  NC_002947/4765231‑4765524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.