New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4780866 =	33 (0.670)	3 (0.070)	3/236	NT	8.8%	coding (6448/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4780910 =	32 (0.700)					coding (6404/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

ATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCG  >  NC_002947/4780718‑4781013                                                                                                                                                     |                                                                                                                                                    cgctggatccgtccttgccggtggcgcgccaggccgatgtgcttcgcgtgagccaggcgcgggtgctggtgtgcgatgatcattgcctgggcttggcccaagcgatgctggaaggcttccaagggccgccgcccttgtttgtgtgggag                                                                                                                                                     <  5:20449‑M1/1‑1 (MQ=255) aTCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATggg                                                                                                                                                     <  7:83031/149‑1 (MQ=255) aTCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATggg                                                                                                                                                     <  6:147584/149‑1 (MQ=255)  tCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGc                                                                                                                                                    <  2:267869/149‑1 (MQ=255)  gctggatccgtccttgccggtggcgcgcctggccgatgtgctgcgcttgagccaggcgcgggtgctggtgtgcgatgagcattgcctgggcttggcccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGc                                                                                                                                                    >  1:318283‑M1/148‑149 (MQ=255)    aCGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGTAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCa                                                                                                                                                   <  3:214767/148‑1 (MQ=255)       atccgtccttgccggtggcgcgcctggccgatgtgctgcgcttgagccaggcgcgggtgctggtgtgcgatgagcattgcctgggcttggcccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAGGTg                                                                                                                                               >  8:87942‑M1/143‑149 (MQ=255)          cgtccttgccggtggcgcgcctggccgatgtgctgcgcttgagccaggcgcgggtgctggtgtgcgatgagcattgcctgggcttggcccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAGGTgcag                                                                                                                                            >  3:131301‑M1/140‑149 (MQ=255)             ccccGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCAt                                                                                                                                         <  8:63328/149‑1 (MQ=255)               ccGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCt                                                                                                                                       >  8:205549/1‑149 (MQ=255)                     gCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcg                                                                                                                                 >  3:289526/1‑149 (MQ=255)                       ccAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcggc                                                                                                                               >  5:96457/1‑149 (MQ=255)                             aCGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCcggcgcggcg                                                                                                                         >  1:250616/1‑149 (MQ=255)                                  aGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGGGCAGATCACGTAGGCCAGCAGCTTGGCGGCATTGAAGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGc                                                                                                                    <  5:6734/149‑1 (MQ=255)                                   gCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGc                                                                                                                    <  6:96457/148‑1 (MQ=255)                                    cTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCt                                                                                                                  <  3:75238/149‑1 (MQ=255)                                         tCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAcc                                                                                                             >  8:8410/1‑149 (MQ=255)                                          ctgcgcttgagccaggcgcgggtgctggtgtgcgatgagcattgcctgggcttggcccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAcc                                                                                                             >  3:224048‑M1/108‑148 (MQ=255)                                           tgcgcttgagccaggcgcgggtgctggtgtgcgatgagcattgcctgggcttggcccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAc                                                                                                              >  3:245030‑M1/107‑146 (MQ=255)                                           tgcgcttgagccaggcgcgggtgctggtgtgcgatgagcattgcctgggcttggcccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAc                                                                                                              <  4:245030‑M1/40‑1 (MQ=255)                                           aGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAcc                                                                                                             <  7:120415/147‑1 (MQ=255)                                                   gttgAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAcc                                                                                                             <  3:86137/139‑1 (MQ=255)                                                   gttgAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCAcc                                                                                                             >  4:86137/1‑139 (MQ=255)                                                                gCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTcgg                                                                                      <  7:8410/149‑1 (MQ=255)                                                                    gTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCggcggc                                                                                  >  3:252768/1‑149 (MQ=255)                                                                         aCCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTg                                                                             <  7:275128/149‑1 (MQ=255)                                                                          ccATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTgg                                                                            <  2:250616/149‑1 (MQ=255)                                                                                    tttAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGaa                                                                          >  1:91252/1‑141 (MQ=255)                                                                                    tttAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGaa                                                                          <  2:91252/141‑1 (MQ=255)                                                                                      tAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCGACAAGGTCGGCGGCGCTTGGAAGCCTTCGa                                                                  <  4:289526/147‑1 (MQ=255)                                                                                      tAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGa                                                                  <  4:252768/147‑1 (MQ=255)                                                                                       aGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGc                                                                <  7:205549/148‑1 (MQ=255)                                                                                        ggCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCa                                                               <  2:151138/148‑1 (MQ=255)                                                                                                 cccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAg                                                                                                                                                  <  5:321953‑M1/4‑1 (MQ=255)                                                                                                 cccaagcgatgctcgaaggcttccaagcgccgccgaccttgttggtctgggaGCAg                                                                                                                                                  >  6:321953‑M1/53‑56 (MQ=255)                                                                                                    gAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGcc                                                    >  7:138292/1‑147 (MQ=255)                                                                                                    gAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCaa                                                  >  4:146275/1‑149 (MQ=255)                                                                                                                aaGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATg                                      >  1:131123/1‑149 (MQ=255)                                                                                                                  gATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGc                                     >  6:147137/1‑148 (MQ=255)                                                                                                                       cGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCATGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCg                               >  3:183185/1‑149 (MQ=255)                                                                                                                                     ttGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCcg                 >  7:116674/1‑149 (MQ=255)                                                                                                                                     ttGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCcg                 >  3:92421/1‑149 (MQ=255)                                                                                                                                        gcggcATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCgcgc              <  3:146275/149‑1 (MQ=255)                                                                                                                                         cggcATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGcc             <  4:92421/149‑1 (MQ=255)                                                                                                                                          ggcATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCt            <  2:299529/149‑1 (MQ=255)                                                                                                                                            cATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTgg          <  8:138292/149‑1 (MQ=255)                                                                                                                                                 aTGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTc       >  6:3886/1‑147 (MQ=255)                                                                                                                                                  tGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCaa     <  5:147137/148‑1 (MQ=255)                                                                                                                                                    ggCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAgcg  >  5:152478/1‑149 (MQ=255)                                                                                                                                                     GCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAgcg  <  5:252663‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ATCACGTCGCTGCCCCGCAGGCCCAAGTACGGTAGCTTGCTCAGCTGGTTGTTGAGCATGCCGGCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCG  >  NC_002947/4780718‑4781013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.