New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4780866 =	33 (0.670)	3 (0.070)	3/236	NT	8.8%	coding (6448/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4780910 =	32 (0.700)					coding (6404/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

GCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGACGGATCCAGCG  >  NC_002947/4780781‑4781057                                                                                                                                  |                                                                                                                                                    gCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTcgg                                                                                                                                  <  7:8410/149‑1 (MQ=255)     gTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCggcggc                                                                                                                              >  3:252768/1‑149 (MQ=255)          aCCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTg                                                                                                                         <  7:275128/149‑1 (MQ=255)           ccATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTgg                                                                                                                        <  2:250616/149‑1 (MQ=255)                     tttAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGaa                                                                                                                      >  1:91252/1‑141 (MQ=255)                     tttAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGaa                                                                                                                      <  2:91252/141‑1 (MQ=255)                       tAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCGACAAGGTCGGCGGCGCTTGGAAGCCTTCGa                                                                                                              <  4:289526/147‑1 (MQ=255)                       tAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGa                                                                                                              <  4:252768/147‑1 (MQ=255)                        aGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGc                                                                                                            <  7:205549/148‑1 (MQ=255)                         ggCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCa                                                                                                           <  2:151138/148‑1 (MQ=255)                                     gAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGcc                                                                                                >  7:138292/1‑147 (MQ=255)                                     gAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCaa                                                                                              >  4:146275/1‑149 (MQ=255)                                                 aaGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATg                                                                                  >  1:131123/1‑149 (MQ=255)                                                   gATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGc                                                                                 >  6:147137/1‑148 (MQ=255)                                                        cGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCATGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCg                                                                           >  3:183185/1‑149 (MQ=255)                                                                      ttGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCcg                                                             >  3:92421/1‑149 (MQ=255)                                                                      ttGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCcg                                                             >  7:116674/1‑149 (MQ=255)                                                                         gcggcATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCgcgc                                                          <  3:146275/149‑1 (MQ=255)                                                                          cggcATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGcc                                                         <  4:92421/149‑1 (MQ=255)                                                                           ggcATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCt                                                        <  2:299529/149‑1 (MQ=255)                                                                             cATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTgg                                                      <  8:138292/149‑1 (MQ=255)                                                                                  aTGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTc                                                   >  6:3886/1‑147 (MQ=255)                                                                                   tGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCaa                                                 <  5:147137/148‑1 (MQ=255)                                                                                     ggCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAgcg                                              >  5:152478/1‑149 (MQ=255)                                                                                      GCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAgcg                                              <  5:252663‑M1/148‑1 (MQ=255)                                                                                       CAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCgca                                            >  6:252663‑M1/1‑149 (MQ=255)                                                                                         ggtgcaggcacacgccgcgccggcacagatgctgcacctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCgcag                                           >  3:224048‑M2/42‑148 (MQ=255)                                                                                          gtgcaggcacacgccgcgccggcacagatgctgcacctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCgca                                            <  4:245030‑M2/106‑1 (MQ=255)                                                                                          gtgcaggcacacgccgcgccggcacagatgctgcacctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCgca                                            >  3:245030‑M2/41‑146 (MQ=255)                                                                                             CAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCGCAAGCGCCGCACAt                                      <  7:234029‑M1/149‑1 (MQ=255)                                                                                              AGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTTGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATc                                     <  8:178570‑M1/149‑1 (MQ=255)                                                                                                 aTCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAgc                                               <  3:138221/136‑1 (MQ=255)                                                                                                 aTCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAgc                                               >  4:138221/1‑136 (MQ=255)                                                                                                    tgtgCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAg                               >  2:231568/1‑149 (MQ=255)                                                                                                        ccGGCGCGGCGGGTGCCTGCACCTGCTCCCAGACCAACCAGGGCGGCGGCGCTTGGCAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGgcgc                           <  8:234029/149‑1 (MQ=255)                                                                                                           gcgcggcgTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCAccc                                                              <  5:292525/111‑1 (MQ=255)                                                                                                           gcgcggcgTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCAccc                                                              >  6:292525/1‑111 (MQ=255)                                                                                                                  gtgtGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCa                                                  <  5:321101/116‑1 (MQ=255)                                                                                                                  gtgtGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCa                                                  >  6:321101/1‑116 (MQ=255)                                                                                                                     tgCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAg               >  6:20449/1‑148 (MQ=255)                                                                                                                       ccTGCACCTTCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGAc            <  5:3886/149‑1 (MQ=255)                                                                                                                       ccTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGAc            >  5:18968/1‑149 (MQ=255)                                                                                                                        ctgcccctgcccCCACAACAACATGGGCGGGGGCGCTTGCACGCTTTCGTCCATCGCTTGGGCCAACCCCTGGAAATGCTAATCCCACCCCACCACCCGCGCCTGGCTCAAGCGCACCACATCGGCCCGGCGCGCCACCGGCAAGGACg           <  6:18968/149‑1 (MQ=255)                                                                                                                        ctgcacctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGACg           >  3:131301‑M2/11‑149 (MQ=255)                                                                                                                           cacctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGACGGAt        >  8:87942‑M2/8‑149 (MQ=255)                                                                                                                              ctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTggg                                                                                                  >  6:321953‑M2/5‑56 (MQ=255)                                                                                                                              ctgcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTggg                                                                                                  <  5:321953‑M2/52‑1 (MQ=255)                                                                                                                              cTGCCCCCAGACCACCCTGGGGGGGGGCGCTGGCACGCCTTCGAGCAGCGCTTGGCCCACCCCCAGGCAATGCTCATCGCACCCCACCACCCGCGCCTGGCTCACGCGCACCACAGCGCCCCGGCGCGCCACCGGCAAGGACGGATCCa     <  4:131301/149‑1 (MQ=255)                                                                                                                                gcTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGACGGATCCAGc   >  1:318283‑M2/3‑149 (MQ=255)                                                                                                                                 cTCCCACACAAACAAGGGCGGCGGCCCTTGGAAGCCTTCCAGCATCGCTTGGGCCAAGCCCAGGCAATGATCATCGCACACCAGCACCCGCGCCTGGCTCACGCGAAGCACATCGGCCTGGCGCGCCACCGGCAAGGACGGATCCAGCg  <  5:20449‑M2/148‑1 (MQ=255)                                                                                                                                  tCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGACGGATCCAGc   >  1:318267/1‑147 (MQ=255)                                                                                                                                  |                                                                                                                                                    GCCTGTTCGACCATGACGCCTTTAGGCACACCGGTCGAACCAGAAGTGAAGATCACGTAGGCCAGCAGCTTGGCGGCATTGATGGGCAGGTGCAGCATCTGTGCCGGCGCGGCGTGTGCCTGCACCTGCTCCCAGACCAACAAGGTCGGCGGCGCTTGGAAGCCTTCGAGCATCGCTTGGGCCAAGCCCAGGCAATGCTCATCGCACACCAGCACCCGCGCCTGGCTCAAGCGCAGCACATCGGCCAGGCGCGCCACCGGCAAGGACGGATCCAGCG  >  NC_002947/4780781‑4781057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.