New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4782678 =	47 (0.950)	3 (0.060)	3/248	NT	6.3%	coding (4636/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4782724 =	43 (0.900)					coding (4590/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

GCTGAACGCGCCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTT  >  NC_002947/4782532‑4782812                                                                                                                                                    |                                                                                                                                       gagctgcgcctggactggacctacagccgcgacatgttccacgaggcgaccatcgagcaactcgccagccggtatcagcaggcgttgcgcgaggtcatcgagcactgcgtggaacctgaggcgcaaggcattacgccaagcgacttcc                                                                                                                                        <  1:21704‑M1/1‑1 (MQ=255)   tGAACGCGCCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCAcc                                                                                                                                    >  2:248921/1‑149 (MQ=255)     aaCGCGCCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCgg                                                                                                                                  <  5:307903/149‑1 (MQ=255)        gcgcCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAg                                                                                                                               >  7:126238/1‑149 (MQ=255)          gcCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGc                                                                                                                             >  7:250843/1‑149 (MQ=255)          gcCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGc                                                                                                                             >  3:205104/1‑149 (MQ=255)          gcCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGc                                                                                                                             >  3:201105/1‑149 (MQ=255)            cGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGACCCCGGGTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACACCGGAGAGATGTCTGCGCTATCGCGCGCGGCCCCCGGCAGGc                                                                                                                             >  4:21882/1‑147 (MQ=255)              aCATCAAGGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGGGTGCATCAGCAGCCCTTCCTGCAGCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATc                                                                                                                         <  3:21882/149‑1 (MQ=255)                aTCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATc                                                                                                                         >  3:152129/1‑147 (MQ=255)                  cAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGt                                                                                                                     >  6:72210/1‑149 (MQ=255)                       gCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTtgctg                                                                                                                >  6:202704/1‑149 (MQ=255)                           ggTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTgg                                                                                                            <  8:250843/149‑1 (MQ=255)                            gTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGTTCAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTgg                                                                                                            <  1:248921/149‑1 (MQ=255)                                   cgGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGccc                                                                                                    <  3:65418/149‑1 (MQ=255)                                    ggTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCg                                                                                                   <  8:126238/149‑1 (MQ=255)                                         cAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAg                                                                                              <  4:152129/149‑1 (MQ=255)                                          aaTACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGt                                                                                             <  6:181932/149‑1 (MQ=255)                                           aTACTGCATCAGATAGATGCCCGACCCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGGCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTg                                                                                            <  6:180663/149‑1 (MQ=255)                                                gaccatcgagcaactcgccagccggtatcagcaggcgttgcgcgaggtcatcgagcactgcgtggaacctgaggcgcaaggcattacgccaagcgacttcCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGaa                                                                                        >  4:92076‑M1/101‑149 (MQ=255)                                                      gatagatGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCtt                                                                                 >  6:270701/1‑149 (MQ=255)                                                                 gAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAg                                                                                                                      >  6:271621/1‑101 (MQ=255)                                                                 gAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAg                                                                                                                      <  5:271621/101‑1 (MQ=255)                                                                    cccGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTg                                                                   <  3:127254/149‑1 (MQ=255)                                                                      cGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTgcg                                                                 <  1:282897/149‑1 (MQ=255)                                                                            gAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAg                                                           <  4:201105/149‑1 (MQ=255)                                                                            gAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAg                                                           <  4:205104/149‑1 (MQ=255)                                                                              gCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGt                                                         >  8:82196/1‑149 (MQ=255)                                                                              gCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGt                                                         <  5:72210/149‑1 (MQ=255)                                                                                aaGGGGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTc                                                       <  8:114456/149‑1 (MQ=255)                                                                                 aGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTcc                                                      <  8:214382/149‑1 (MQ=255)                                                                                  ggTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCCATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCa                                                     >  1:100702/1‑149 (MQ=255)                                                                                            agcagcCCTTCCTGCATCAGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTc                                           >  5:126712/1‑149 (MQ=255)                                                                                              cagcCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGcc                                                               >  1:301774/1‑127 (MQ=255)                                                                                              cagcCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGcc                                                               <  2:301774/127‑1 (MQ=255)                                                                                              cagcCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGa                                         <  5:202704/149‑1 (MQ=255)                                                                                                       cTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgc                                >  8:30063/1‑149 (MQ=255)                                                                                                        tGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgcg                               >  6:311093/1‑149 (MQ=255)                                                                                                          tgcgtggaacctgaggcgcaaggcattacgccaagcgacttcCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCtt                                                                                 >  6:178198‑M1/43‑98 (MQ=255)                                                                                                          tgcgtggaacctgaggcgcaaggcattacgccaagcgacttcCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCtt                                                                                 <  5:178198‑M1/56‑1 (MQ=255)                                                                                                               gCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGcc                        >  2:52553/1‑149 (MQ=255)                                                                                                                 g‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctg                      <  5:270701/149‑1 (MQ=255)                                                                                                                   aCAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctgc                     <  7:30063/149‑1 (MQ=255)                                                                                                                              aTGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCt          >  4:96872/1‑149 (MQ=255)                                                                                                                                  cTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGc       >  2:21704/1‑148 (MQ=255)                                                                                                                                   ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctgc                     <  1:293385/133‑1 (MQ=255)                                                                                                                                   ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctgc                     >  2:293385/1‑133 (MQ=255)                                                                                                                                   ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctg                      <  3:263215/132‑1 (MQ=255)                                                                                                                                   ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctg                      >  4:263215/1‑132 (MQ=255)                                                                                                                                      gATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGtt  <  2:100702/149‑1 (MQ=255)                                                                                                                                            gcgcgcgGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgc                                <  3:221974/113‑1 (MQ=255)                                                                                                                                            gcgcgcgGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgc                                >  4:221974/1‑113 (MQ=255)                                                                                                                                                    |                                                                                                                                       GCTGAACGCGCCGACATCAATGGCGTGGTCGACGCGGTAGCAATACTGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCG‑ACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTT  >  NC_002947/4782532‑4782812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.