New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4782678 =	47 (0.950)	3 (0.060)	3/248	NT	6.3%	coding (4636/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4782724 =	43 (0.900)					coding (4590/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

TGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAGGTCCAGTCCAGGCGCAGCTC  >  NC_002947/4782578‑4782870                                                                                                                                                   |                                                                                                                                                   gaccatcgagcaactcgccagccggtatcagcaggcgttgcgcgaggtcatcgagcactgcgtggaacctgaggcgcaaggcattacgccaagcgacttcCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGaa                                                                                                                                                  >  4:92076‑M1/101‑149 (MQ=255)        gatagatGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCtt                                                                                                                                           >  6:270701/1‑149 (MQ=255)                      cccGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTg                                                                                                                             <  3:127254/149‑1 (MQ=255)                        cGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTgcg                                                                                                                           <  1:282897/149‑1 (MQ=255)                              gAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAg                                                                                                                     <  4:205104/149‑1 (MQ=255)                              gAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAg                                                                                                                     <  4:201105/149‑1 (MQ=255)                                gCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGt                                                                                                                   >  8:82196/1‑149 (MQ=255)                                gCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGt                                                                                                                   <  5:72210/149‑1 (MQ=255)                                  aaGGGGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTc                                                                                                                 <  8:114456/149‑1 (MQ=255)                                   aGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTcc                                                                                                                <  8:214382/149‑1 (MQ=255)                                    ggTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCCATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCa                                                                                                               >  1:100702/1‑149 (MQ=255)                                              agcagcCCTTCCTGCATCAGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTc                                                                                                     >  5:126712/1‑149 (MQ=255)                                                cagcCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGcc                                                                                                                         <  2:301774/127‑1 (MQ=255)                                                cagcCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGcc                                                                                                                         >  1:301774/1‑127 (MQ=255)                                                cagcCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGa                                                                                                   <  5:202704/149‑1 (MQ=255)                                                         cTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgc                                                                                          >  8:30063/1‑149 (MQ=255)                                                          tGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgcg                                                                                         >  6:311093/1‑149 (MQ=255)                                                           tgcgtggaacctgaggcgcaaggcattacgccaagcgacttcCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCtt                                                                                                                                           >  6:178198‑M1/43‑98 (MQ=255)                                                           tgcgtggaacctgaggcgcaaggcattacgccaagcgacttcCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCtt                                                                                                                                           <  5:178198‑M1/56‑1 (MQ=255)                                                                 gCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGcc                                                                                  >  2:52553/1‑149 (MQ=255)                                                                   gACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctg                                                                                <  5:270701/149‑1 (MQ=255)                                                                    aCAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctgc                                                                               <  7:30063/149‑1 (MQ=255)                                                                               aTGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCt                                                                    >  4:96872/1‑149 (MQ=255)                                                                                   cTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGc                                                                 >  2:21704/1‑148 (MQ=255)                                                                                    ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctgc                                                                               <  1:293385/133‑1 (MQ=255)                                                                                    ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctgc                                                                               >  2:293385/1‑133 (MQ=255)                                                                                    ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctg                                                                                <  3:263215/132‑1 (MQ=255)                                                                                    ttCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCctg                                                                                >  4:263215/1‑132 (MQ=255)                                                                                       gATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGtt                                                            <  2:100702/149‑1 (MQ=255)                                                                                           aagcgacttcccactggccgggctgagccagcagcaactggatcgcctgccggtggGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCa                                                                                                           >  6:178198‑M2/57‑98 (MQ=255)                                                                                           aagcgacttcccactggccgggctgagccagcagcaactggatcgcctgccggtggGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCa                                                                                                           <  5:178198‑M2/42‑1 (MQ=255)                                                                                             gcgcgcgGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgc                                                                                          >  4:221974/1‑113 (MQ=255)                                                                                             gcgcgcgGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTcgc                                                                                          <  3:221974/113‑1 (MQ=255)                                                                                                  ttcccactggccgggctgagccagcagcaactggatcgcctgccggtggGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTc                                                 >  4:92076‑M2/50‑149 (MQ=255)                                                                                                               gCGATGCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGa                                                               >  7:282516/1‑122 (MQ=255)                                                                                                               gCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGa                                                               <  8:282516/122‑1 (MQ=255)                                                                                                                  aTCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGt                                 >  4:265774/1‑149 (MQ=255)                                                                                                                    ccAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTcg                               >  1:132155/1‑149 (MQ=255)                                                                                                                       gTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTg                                         >  2:213761/1‑136 (MQ=255)                                                                                                                       gTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTg                                         <  1:213761/136‑1 (MQ=255)                                                                                                                       gTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATg                                  <  4:151922/143‑1 (MQ=255)                                                                                                                       gTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATg                                  >  3:151922/1‑143 (MQ=255)                                                                                                                       gTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCgg                            >  5:75772/1‑149 (MQ=255)                                                                                                                           ctgctgGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGt                        <  3:265774/149‑1 (MQ=255)                                                                                                                              ctgGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGTTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAg                      <  1:52553/148‑1 (MQ=255)                                                                                                                              ctgGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAg                      <  7:82196/148‑1 (MQ=255)                                                                                                                                   tCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAGgtccag                >  5:129917/1‑149 (MQ=255)                                                                                                                                        ccGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAg                      <  7:7134/138‑1 (MQ=255)                                                                                                                                        ccGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAg                      >  8:7134/1‑138 (MQ=255)                                                                                                                                           gCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATg                                                    <  7:85553/105‑1 (MQ=255)                                                                                                                                           gCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATg                                                    >  8:85553/1‑105 (MQ=255)                                                                                                                                             cAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAGGTCCAGTCCAGgcg        >  8:271190/1‑147 (MQ=255)                                                                                                                                                  gGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAGGTCCAGTCCAGGCGCAGCTc  <  1:21704‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TGCATCAGATAGATGCCCGAACCCGGTTCGAGCAAGGTGTGCATCAGCAGCCCTTCCTGCATCGGCGACAACGGATAGATGTCTTCGATATCGCGCGCGGCCACCGGCAGGCGATCCAGTTGCTGCTGGCTCAGCCCGGCCAGTGGGAAGTCGCTTGGCGTAATGCCTTGCGCCTCAGGTTCCACGCAGTGCTCGATGACCTCGCGCAACGCCTGCTGATACCGGCTGGCGAGTTGCTCGATGGTCGCCTCGTGGAACATGTCGCGGCTGTAGGTCCAGTCCAGGCGCAGCTC  >  NC_002947/4782578‑4782870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.