New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4907717	46 (0.930)	3 (0.060)	3/246	NT	6.7%	coding (72/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 4907760	39 (0.820)					coding (29/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

ACGCAGATGATCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGC  >  NC_002947/4907571‑4907861                                                                                                                                                   |                                                                                                                                                 aCGCAGATGATCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAggtggt                                                                                                                                                 >  4:35989/1‑148 (MQ=255)  cGCAGATGATCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTaa                                                                                                                                               <  1:235539/149‑1 (MQ=255)     aGATGATCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCg                                                                                                                                            >  5:131284/1‑149 (MQ=255)      gatgatCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCgg                                                                                                                                           >  4:243526/1‑149 (MQ=255)       atgatCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGc                                                                                                                                          >  6:218445/1‑149 (MQ=255)             tGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCggagatag                                                                                                                                     >  1:5118/1‑142 (MQ=255)             tGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTc                                                                                                                                    >  2:291210/1‑149 (MQ=255)             tGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTc                                                                                                                                    >  3:271923/1‑149 (MQ=255)             tGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTc                                                                                                                                    >  7:212728/1‑149 (MQ=255)             tGCAATCTGGGTAATGCGTCAATTGCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGTGCACGGATCAGGTGGTAACCg                                                                                                                                            <  2:5118/141‑1 (MQ=255)              gCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAGGGGGCACGGATCAGGTGGTAACctgcctgcac                                                                                                                                    >  8:150552/1‑146 (MQ=255)              gCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCg                                                                                                                                            >  8:225019/1‑140 (MQ=255)              gCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCg                                                                                                                                            <  7:225019/140‑1 (MQ=255)                  tCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAAc                                                                                                                                              <  3:146259/134‑1 (MQ=255)                  tCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAAc                                                                                                                                              >  4:146259/1‑134 (MQ=255)                      ggTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATggg                                                                                                                           <  8:148501/149‑1 (MQ=255)                          aTGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAgg                                                                                                                       <  4:271923/149‑1 (MQ=255)                          aTGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAgg                                                                                                                       <  3:35989/149‑1 (MQ=255)                          aTGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAg                                                                                                                        <  1:142499/148‑1 (MQ=255)                          aTGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTAGGCGTGGCGATGAATGGCATCGGCGCGCAGGTGCGGCGAAGGGGCACGGATCAGGGGGTAACCGGACTGCTCCAGCATGGGCAgg                                                                                                                       >  4:96886/1‑149 (MQ=255)                             cGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCTGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTaa                                                                                                                    <  3:96886/149‑1 (MQ=255)                                  aTTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAAtcgtc                                                                                                               >  8:9911/1‑149 (MQ=255)                                     tCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGa                                                                                                             <  6:281509/148‑1 (MQ=255)                                           gCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGttt                                                                                                       <  1:291210/148‑1 (MQ=255)                                               aTAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGaaaccgtcgacgattacctgcccatgctggagcaggccggttaccacc                                                                                                  <  8:45199‑M1/149‑49 (MQ=255)                                                   ccccAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTa                                                                                              >  4:293603/1‑149 (MQ=255)                                                          ggCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGAc                                                                                       >  3:286788/1‑149 (MQ=255)                                                            cccACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGaaaccgtcgacgattacctgcccatgctggagcaggccggttaccacctgatcc                                                                                            >  7:246286‑M1/1‑88 (MQ=255)                                                            cccACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGaaaccgtcgacgattacctgcccatgctggagcaggccggttaccacctgatcc                                                                                            <  8:246286‑M1/142‑55 (MQ=255)                                                              cACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTc                                                                                   <  7:9911/149‑1 (MQ=255)                                                                     gAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGAGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGAATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCa                                                                            >  1:146186/1‑149 (MQ=255)                                                                                  aTTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCggg                                                               <  8:212728/149‑1 (MQ=255)                                                                                      cttcGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGa                                                            <  4:286788/148‑1 (MQ=255)                                                                                       ttcGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGAAGGTAATCGTCGCCGGTTTCGCCCAGTCACTGGCCTGTCTTGGTCAGTCCACGTCCGGGTGAAt                                                          >  4:62907/1‑149 (MQ=255)                                                                                           gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTg                                                                                >  8:100231/1‑123 (MQ=255)                                                                                           gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTg                                                                                <  7:100231/123‑1 (MQ=255)                                                                                           gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTc                                                        >  2:9020/1‑147 (MQ=255)                                                                                           gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGa                                                      <  7:150552/149‑1 (MQ=255)                                                                                              tGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGc                                                   >  7:152380/1‑149 (MQ=255)                                                                                                  gATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCa                                               <  5:218445/149‑1 (MQ=255)                                                                                                       aTGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATg                                          <  6:131284/149‑1 (MQ=255)                                                                                                         ggCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCg                                        >  2:106522/1‑149 (MQ=255)                                                                                                           cATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGa                                      <  6:88601/149‑1 (MQ=255)                                                                                                           cATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGa                                      <  3:218898/149‑1 (MQ=255)                                                                                                                  gcgcAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCg                               <  4:119591/149‑1 (MQ=255)                                                                                                                  gcgcAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCg                               <  8:262631/149‑1 (MQ=255)                                                                                                                  gcgcAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCg                               <  2:312293/149‑1 (MQ=255)                                                                                                                        ttGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAg                          >  5:160303/1‑148 (MQ=255)                                                                                                                           cggcgAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTa                        >  1:40388/1‑147 (MQ=255)                                                                                                                           cggagAAGGGGCACGGATCAGGTCGTAACCGGCCTGCTACAGCATGGGCAGGTAATCGTCGACGGATTCCACCAGTACCAGGACTCTCTTGCTCATGCCACCAACGGGTGAATTCGAGGCGTCAATATTCGGATTCACCGGCCAGTa                        >  2:228529/1‑147 (MQ=255)                                                                                                                                 aGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAAt                <  3:243526/149‑1 (MQ=255)                                                                                                                                  ggggCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATg               <  3:293603/149‑1 (MQ=255)                                                                                                                                     gCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGaa            <  6:160303/149‑1 (MQ=255)                                                                                                                                         ggATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTccacctgatccgtgccccttcgccgcaactgcgcgccgatgccattcatcgccacgccgaagaaatcgatgcggtactcacccgtggg               >  7:246286‑M2/1‑54 (MQ=255)                                                                                                                                         ggATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTccacctgatccgtgccccttcgccgcaactgcgcgccgatgccattcatcgccacgccgaagaaatcgatgcggtactcacccgtggg               <  8:246286‑M2/142‑89 (MQ=255)                                                                                                                                               ggtggtAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTccacctgatccgtgccccttcgccgcaactgcgcgccgatgccattcatcgccacgccgaagaaatcgatgcggtactcacccgtgggccgctggggctat  <  8:45199‑M2/149‑102 (MQ=255)                                                                                                                                               ggtggtAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAgg   >  2:28367/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                 ACGCAGATGATCTGCAATCTGGGTAATGCGTCAATTTCGGTGGCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGC  >  NC_002947/4907571‑4907861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.