New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4907717	46 (0.930)	3 (0.060)	3/246	NT	6.7%	coding (72/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 4907760	39 (0.820)					coding (29/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein

GCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCC  >  NC_002947/4907613‑4907904                                                                                                                                                    |                                                                                                                                                 gCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGttt                                                                                                                                                  <  1:291210/148‑1 (MQ=255)         ccccAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTa                                                                                                                                         >  4:293603/1‑149 (MQ=255)                ggCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGAc                                                                                                                                  >  3:286788/1‑149 (MQ=255)                    cACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTc                                                                                                                              <  7:9911/149‑1 (MQ=255)                           gAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGAGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGAATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCa                                                                                                                       >  1:146186/1‑149 (MQ=255)                                        aTTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCggg                                                                                                          <  8:212728/149‑1 (MQ=255)                                            cttcGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGa                                                                                                       <  4:286788/148‑1 (MQ=255)                                             ttcGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGAAGGTAATCGTCGCCGGTTTCGCCCAGTCACTGGCCTGTCTTGGTCAGTCCACGTCCGGGTGAAt                                                                                                     >  4:62907/1‑149 (MQ=255)                                                 gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTg                                                                                                                           >  8:100231/1‑123 (MQ=255)                                                 gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTg                                                                                                                           <  7:100231/123‑1 (MQ=255)                                                 gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTc                                                                                                   >  2:9020/1‑147 (MQ=255)                                                 gCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGa                                                                                                 <  7:150552/149‑1 (MQ=255)                                                    tGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGc                                                                                              >  7:152380/1‑149 (MQ=255)                                                        gATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCa                                                                                          <  5:218445/149‑1 (MQ=255)                                                             aTGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATg                                                                                     <  6:131284/149‑1 (MQ=255)                                                               ggCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCg                                                                                   >  2:106522/1‑149 (MQ=255)                                                                 cATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGa                                                                                 <  6:88601/149‑1 (MQ=255)                                                                 cATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGa                                                                                 <  3:218898/149‑1 (MQ=255)                                                                        gcgcAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCg                                                                          <  8:262631/149‑1 (MQ=255)                                                                        gcgcAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCg                                                                          <  2:312293/149‑1 (MQ=255)                                                                        gcgcAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCg                                                                          <  4:119591/149‑1 (MQ=255)                                                                              ttGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAg                                                                     >  5:160303/1‑148 (MQ=255)                                                                                 cggcgAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTa                                                                   >  1:40388/1‑147 (MQ=255)                                                                                 cggagAAGGGGCACGGATCAGGTCGTAACCGGCCTGCTACAGCATGGGCAGGTAATCGTCGACGGATTCCACCAGTACCAGGACTCTCTTGCTCATGCCACCAACGGGTGAATTCGAGGCGTCAATATTCGGATTCACCGGCCAGTa                                                                   >  2:228529/1‑147 (MQ=255)                                                                                       aGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAAt                                                           <  3:243526/149‑1 (MQ=255)                                                                                        ggggCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATg                                                          <  3:293603/149‑1 (MQ=255)                                                                                           gCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGaa                                                       <  6:160303/149‑1 (MQ=255)                                                                                               ggATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTccacctgatccgtgccccttcgccgcaactgcgcgccgatgccattcatcgccacgccgaagaaatcgatgcggtactcacccgtggg                                                          <  8:246286‑M2/142‑89 (MQ=255)                                                                                               ggATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTccacctgatccgtgccccttcgccgcaactgcgcgccgatgccattcatcgccacgccgaagaaatcgatgcggtactcacccgtggg                                                          >  7:246286‑M2/1‑54 (MQ=255)                                                                                                     ggtggtAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTccacctgatccgtgccccttcgccgcaactgcgcgccgatgccattcatcgccacgccgaagaaatcgatgcggtactcacccgtgggccgctggggctat                                             <  8:45199‑M2/149‑102 (MQ=255)                                                                                                     ggtggtAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAgg                                              >  2:28367/1‑148 (MQ=255)                                                                                                                    gCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGc                              >  2:182068/1‑149 (MQ=255)                                                                                                                      tCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCtg                            >  5:128272/1‑149 (MQ=255)                                                                                                                         aGCATGTGCAGGTAATCTTCTACTGTTTCCAAAAGTACCAGGACTGTCTTGATCATGCCACCTCCGGGTTAATTCGAGGCTTCATTATGGGGAGTCAGGGGACAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCtgttg                         <  1:228529/149‑1 (MQ=255)                                                                                                                         aGCATGGGAAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTGCGGGTGAATTCGAGGCGGGATTATGCGGAGTCTCCGGGCAGTACAGTCATTGGAAATAACGAGGCACAAGTGTACTGTGCtgttg                         >  6:245932/1‑149 (MQ=255)                                                                                                                          gCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCtgttgt                        <  8:152380/149‑1 (MQ=255)                                                                                                                              gggCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCgg                                                                                                           <  2:195495/62‑1 (MQ=255)                                                                                                                              gggCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCgg                                                                                                           >  1:195495/1‑62 (MQ=255)                                                                                                                                 cAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACa                                                 >  6:102748/1‑117 (MQ=255)                                                                                                                                  aGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTtgttgctgttg                <  2:146186/149‑1 (MQ=255)                                                                                                                                    gTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTtgttgctgttgct              >  2:87249/1‑149 (MQ=255)                                                                                                                                    gTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTtgttgctgttgct              <  1:182068/149‑1 (MQ=255)                                                                                                                                       aTCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTtgttgctgttgctgt            <  1:106522/148‑1 (MQ=255)                                                                                                                                             gACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTTCTGTGCTGTTGTTGCTGTTGCTgttgccgt      <  1:28367/148‑1 (MQ=255)                                                                                                                                                ggTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTgttgccgttgcc  >  7:109215/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GCGGATAGCCCCAGCGGCCCACGGGTGAGTACCGCATCGATTTCTTCGGCGTGGCGATGAATGGCATCGGCGCGCAGTTGCGGCGAAGGGGCACGGATCAGGTGGTAACCGGCCTGCTCCAGCATGGGCAGGTAATCGTCGACGGTTTCCACCAGTACCAGGACTGTCTTGCTCATGCCACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCC  >  NC_002947/4907613‑4907904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.