New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5022830 =	38 (0.770)	4 (0.090)	4/240	NT	10.2%	coding (181/657 nt)	PP_4427	amino acid ABC transporter permease
	?	NC_002947	5022927 =	35 (0.760)					coding (84/657 nt)	PP_4427	amino acid ABC transporter permease

GCTACCGAATTAATCGCGCCGCGCATTATCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTA  >  NC_002947/5022682‑5022969                                                                                                                                                     |                                                                                                                                            atccaaatcgccgcgtcaaacccactgccgcgcctttggctgatttaacgtgagggagagtcaaatggcagatttactaccacttatgctccagggcgcatgggttaccctgcagatcaccttcttcggatctctcctggccatcgttg                                                                                                                                             >  6:243032‑M1/149‑149 (MQ=255)   tACCGAATTAATCGCGCCGCGCATTATCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGag                                                                                                                                             >  8:278818/1‑147 (MQ=255)     aaatcggcgcgtcaaacccactgccgcgcctttggctgatttaacgtgaggtagagtcaaatggcagatttactaccacttatgctccagggcgcatgggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGc                                                                                                                                         <  3:153988‑M1/5‑1 (MQ=255)            aaTCGCGCCGCGCATTATCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTa                                                                                                                                   <  5:54629/148‑1 (MQ=255)               gtcaaacccactgccgcgcctttggctgatttaacgtgaggtagagtcaaatggcagatttactaccacttatgctccagggcgcatgggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGCGACGTAcccc                                                                                                                               <  2:60086‑M1/15‑1 (MQ=255)                         aTTATCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGAtct                                                                                                                      >  1:293826/1‑148 (MQ=255)                          ttATCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCa                                                                                                                    <  6:14495/149‑1 (MQ=255)                            aTCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATAGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCaa                                                                                                                   <  7:278818/148‑1 (MQ=255)                                      cATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCaa                                                                                                                   <  1:254854/138‑1 (MQ=255)                                      cATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCaa                                                                                                                   >  2:254854/1‑138 (MQ=255)                                                         cccAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGtc                                                                                     >  5:39748/1‑149 (MQ=255)                                                          ccAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAgac                                                                                                            >  1:316408/1‑125 (MQ=255)                                                          ccAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAgac                                                                                                            <  2:316408/125‑1 (MQ=255)                                                           cAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTAcccc                                                                                                                               >  7:183761/1‑105 (MQ=255)                                                           cAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGtctc                                                                                   <  2:293826/149‑1 (MQ=255)                                                                ccAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGaa                                                                                                                            <  6:111168/103‑1 (MQ=255)                                                                ccAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGaa                                                                                                                            >  5:111168/1‑103 (MQ=255)                                                                 cAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTcc                                                                                  >  8:145723/1‑144 (MQ=255)                                                                 cAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTcc                                                                                  <  7:145723/144‑1 (MQ=255)                                                                              ggTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGa                                                                <  6:39748/149‑1 (MQ=255)                                                                                 gtAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTg                                                             >  5:194486/1‑149 (MQ=255)                                                                                  tAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTg                                                             <  6:194486/148‑1 (MQ=255)                                                                                     gggCGCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTgccg                                                          <  8:189456/148‑1 (MQ=255)                                                                                      atgctccagggcgcacgggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTgccgc                                                         <  8:24056‑M1/85‑1 (MQ=255)                                                                                       tcTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAATAAGAGCCAGAACAATTGAACGAGCATCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCa                                                       <  7:237477/148‑1 (MQ=255)                                                                                           aGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGt                                                   >  3:105121/1‑149 (MQ=255)                                                                                           aGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGt                                                   >  2:130723/1‑149 (MQ=255)                                                                                                 agagTGAATGGAGGAAGCGGAAGGACGAAGAAGATCCAGAACAATTGAACGATCAGCGACGTACCCAGAAAGATCTCAATCTACACGCAGAAAAACCAGCGGAGCGGACTCAATGTCCACATATTGCCGACTGCAGCCAGCGACGCtc                                              >  8:17184/1‑147 (MQ=255)                                                                                                   cacgggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCaa                                           >  7:24056‑M1/51‑149 (MQ=255)                                                                                                    ttGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGacgacg                                                                                                        <  5:94669/87‑1 (MQ=255)                                                                                                    ttGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGacgacg                                                                                                        >  6:94669/1‑87 (MQ=255)                                                                                                    ttGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAAc                                          >  7:64813/1‑149 (MQ=255)                                                                                                      gAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGa                                        >  1:160684/1‑149 (MQ=255)                                                                                                       ggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTTCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGa                                        >  1:60086‑M1/47‑148 (MQ=255)                                                                                                         tGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATgg                                     >  5:53633/1‑149 (MQ=255)                                                                                                             ggaAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAg                                 <  1:130723/149‑1 (MQ=255)                                                                                                                aGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGga                               <  4:105121/148‑1 (MQ=255)                                                                                                                     aaGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATc                         >  5:154720/1‑149 (MQ=255)                                                                                                                        gACGAAGAAGAGCCAGCACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCg                       >  1:255067/1‑148 (MQ=255)                                                                                                                         aCGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGga                               >  6:159695/1‑139 (MQ=255)                                                                                                                             agaagaGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTcc                                                                                  >  7:148901/1‑84 (MQ=255)                                                                                                                             agaagaGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTcc                                                                                  <  8:148901/84‑1 (MQ=255)                                                                                                                                    ccAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCt          >  6:234123/1‑149 (MQ=255)                                                                                                                                          cAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAggg    >  7:262850/1‑149 (MQ=255)                                                                                                                                            aTTGAACAAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACAGTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTa  >  8:206305/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            GCTACCGAATTAATCGCGCCGCGCATTATCTCTGCACCATAAGCGCCAATATGTAGCCCAAGGCCAACGATTGCGACGGTGTAGGGGCTCAGCTCGAGATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTA  >  NC_002947/5022682‑5022969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.