New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5022830 =	38 (0.770)	4 (0.090)	4/240	NT	10.2%	coding (181/657 nt)	PP_4427	amino acid ABC transporter permease
	?	NC_002947	5022927 =	35 (0.760)					coding (84/657 nt)	PP_4427	amino acid ABC transporter permease

ATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGTTTGACGCGCCGATTTGGAT  >  NC_002947/5022780‑5023074                                                                                                                                                    |                                                                                                                                                    cacgggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCaa                                                                                                                                                    >  7:24056‑M1/51‑149 (MQ=255)  ttGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAAc                                                                                                                                                   >  7:64813/1‑149 (MQ=255)    gAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGa                                                                                                                                                 >  1:160684/1‑149 (MQ=255)     ggttaccctgcagatcaccttcttcggatctctcctggccatcgttGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTTCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGa                                                                                                                                                 >  1:60086‑M1/47‑148 (MQ=255)       tGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATgg                                                                                                                                              >  5:53633/1‑149 (MQ=255)           ggaAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAg                                                                                                                                          <  1:130723/149‑1 (MQ=255)              aGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGga                                                                                                                                        <  4:105121/148‑1 (MQ=255)                   aaGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATc                                                                                                                                  >  5:154720/1‑149 (MQ=255)                      gACGAAGAAGAGCCAGCACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCg                                                                                                                                >  1:255067/1‑148 (MQ=255)                       aCGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGga                                                                                                                                        >  6:159695/1‑139 (MQ=255)                                  ccAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCt                                                                                                                   >  6:234123/1‑149 (MQ=255)                                        cAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAggg                                                                                                             >  7:262850/1‑149 (MQ=255)                                          aTTGAACAAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACAGTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTa                                                                                                           >  8:206305/1‑149 (MQ=255)                                              tcgttgcagcgaccctggcggcactcggcaaaatgtcgacatgaagaccgctccgctggttttgcgtcgtctacattgagatctttcggggtacgtcgctgcAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAAcc                                                                                                        >  1:60086‑M2/103‑148 (MQ=255)                                                 ttgcagcgaccctggcggcactcggcaaaatgtcgacatggagaccgctccgctggttttgcgtcgtctacattgagatctttcggggtacgtcgctgcAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCGTg                                                                                                    >  7:24056‑M2/100‑149 (MQ=255)                                                    CAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATgcgc                                                                                                 <  7:12642‑M1/149‑1 (MQ=255)                                                          CGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGa                                                                                           >  6:53633‑M1/1‑149 (MQ=255)                                                          CGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGa                                                                                           >  6:154720‑M1/1‑149 (MQ=255)                                                           gTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAg                                                                                          <  8:262850/149‑1 (MQ=255)                                                               gcggcactcggcaaaatgtcgacatggagaccgctccgctggttttgcgtcgtctacattgagatctttcggggtacgtcgctgcAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCGTGCGCCCTGGAGCAt                                                                                       <  8:24056‑M2/63‑1 (MQ=255)                                                               cccGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTg                                                                                             >  5:214180/1‑142 (MQ=255)                                                               cccGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTg                                                                                             <  6:214180/142‑1 (MQ=255)                                                               cccGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCAt                                                                                       >  4:97802/1‑148 (MQ=255)                                                                 cGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAg                                                                                    >  5:315533/1‑149 (MQ=255)                                                                  gAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGt                                                                                   <  5:234123/149‑1 (MQ=255)                                                                              tGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCt                                                                       <  8:12642/149‑1 (MQ=255)                                                                                tAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTg                                                                      <  8:64813/148‑1 (MQ=255)                                                                                       cgCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGa                                                              <  2:160684/149‑1 (MQ=255)                                                                                        gCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGc                                                                                                                 <  8:740/97‑1 (MQ=255)                                                                                        gCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGc                                                                                                                 >  7:740/1‑97 (MQ=255)                                                                                        gCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGcc                                                                    <  3:134873/142‑1 (MQ=255)                                                                                        gCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGcc                                                                    >  4:134873/1‑142 (MQ=255)                                                                                             aCCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTAc                                                        >  6:320518/1‑149 (MQ=255)                                                                                               cAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCt                                                      >  5:154802/1‑149 (MQ=255)                                                                                                        ggTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTaaa                                             >  4:153988/1‑149 (MQ=255)                                                                                                                    gACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGgc                                 >  6:21327/1‑149 (MQ=255)                                                                                                                        ttttGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCgg                             >  6:271960/1‑149 (MQ=255)                                                                                                                         tttGCCGAGTGCCGCCTGTGTCGGTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCC‑AAGGCGCGGCa                           <  7:17184/149‑1 (MQ=255)                                                                                                                            gCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTaaa                                                                          >  6:321131/1‑100 (MQ=255)                                                                                                                            gCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTaaa                                                                          <  5:321131/100‑1 (MQ=255)                                                                                                                                 gggccgccAGGGGCGCTGCAACGATGGCCAGGACAGATCCGAAGAAGGTGCTCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGtt                    <  2:255067/147‑1 (MQ=255)                                                                                                                                  tGCCGCCAGGGTCGGTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGCGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGttt                   <  5:21327/149‑1 (MQ=255)                                                                                                                                  tGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGttt                   <  5:159695/149‑1 (MQ=255)                                                                                                                                    ccgccAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGtt                    >  1:165994/1‑146 (MQ=255)                                                                                                                                    ccgccAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGtt                    <  2:165994/146‑1 (MQ=255)                                                                                                                                     ggggtacgtcgctgcAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGTTTGAc                <  2:60086‑M2/134‑1 (MQ=255)                                                                                                                                               gctgcAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGTTTGACGCGCCGAttt      <  3:153988‑M2/144‑1 (MQ=255)                                                                                                                                                   cAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTCCCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGTTTGACGCGGCGATTTGGAt  >  6:243032‑M2/2‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATTGAATGGAGGAAGCGGAAGGACGAAGAAGAGCCAGAACAATTGAACGAGCAGCGACGTACCCCGAAAGATCTCAATGTAGACGACGCAAAACCAGCGGAGCGGTCTCCATGTCGACATTTTGCCGAGTGCCGCCAGGGTCGCTGCAACGATGGCCAGGAGAGATCCGAAGAAGGTGATCTGCAGGGTAACCCATGCGCCCTGGAGCATAAGTGGTAGTAAATCTGCCATTTGACTCTACCTCACGTTAAATCAGCCAAAGGCGCGGCAGTGGGTTTGACGCGCCGATTTGGAT  >  NC_002947/5022780‑5023074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.