New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	266739 =	58 (1.170)	4 (0.090)	4/242	NT	7.6%	coding (449/1260 nt)	PP_0215	two‑component system response regulator
	?	NC_002947	266776 =	42 (0.900)					coding (486/1260 nt)	PP_0215	two‑component system response regulator

ACCTGGATAACCTGCGCAAGCGCCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCAATAGTGCGGCATTGCACCGTG  >  NC_002947/266628‑266915                                                                                                                                                     |                                                                                                                                             gcgatcagcaccgccgtaacttgcggatcgttacgcacttcctcttcgagcaccctgaggttcaggccctgggggttcagcgctcgattgatcgcaacctgcacatcggccAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGctgctg                                                                                                                                              >  2:135177‑M1/112‑149 (MQ=255)       aTAACCTGCGCAAGCGCCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGAt                                                                                                                                        <  5:176326/149‑1 (MQ=255)           ccTGCGCAAGCGCCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGc                                                                                                                                    <  4:220689/149‑1 (MQ=255)                gcAAGCGCCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGtt                                                                                                                               <  6:18280/149‑1 (MQ=255)                 cAAGCGCCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTg                                                                                                                              <  7:208677/149‑1 (MQ=255)                    gcgcCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGa                                                                                                                           >  8:176419/1‑149 (MQ=255)                    gcgcCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGa                                                                                                                           <  3:154688/149‑1 (MQ=255)                     cgcCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGa                                                                                                                           <  1:283082/148‑1 (MQ=255)                     cgcCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGa                                                                                                                           >  2:283082/1‑148 (MQ=255)                     cgcCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGAt                                                                                                                          <  7:46994/149‑1 (MQ=255)                            aaGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATc                                                                                                                     >  5:7386/1‑147 (MQ=255)                                 ttGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCt                                                                                                             <  5:324293/149‑1 (MQ=255)                                       ctgGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAAc                                                                                                         <  8:283252/147‑1 (MQ=255)                                       ctgGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAAc                                                                                                         <  7:176419/147‑1 (MQ=255)                                         ggCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGACCAATCGA‑GCGCTGAAcccc                                                                                                      >  6:26352/1‑148 (MQ=255)                                           ccGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGAtg                                                                                                                                       <  5:132148/114‑1 (MQ=255)                                           ccGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGAtg                                                                                                                                       <  5:136951/114‑1 (MQ=255)                                           ccGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGAtg                                                                                                                                       >  6:136951/1‑114 (MQ=255)                                           ccGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGAtg                                                                                                                                       >  6:132148/1‑114 (MQ=255)                                            cGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAgg                                                                                                  >  7:119525/1‑149 (MQ=255)                                                   gaggagATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGaa                                                                                           >  6:301048/1‑149 (MQ=255)                                                          tCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAgg                                                                                    <  3:244240/149‑1 (MQ=255)                                                          tCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAgg                                                                                    <  6:7386/149‑1 (MQ=255)                                                          tCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGACCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAgg                                                                                    <  5:26352/149‑1 (MQ=255)                                                              cTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAGCCTCAGGGTGc                                                                                >  4:60096/1‑149 (MQ=255)                                                              cTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGc                                                                                >  2:177171/1‑149 (MQ=255)                                                              cTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGc                                                                                <  7:16635/149‑1 (MQ=255)                                                                        ccGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAgg                                                                       <  7:230055/148‑1 (MQ=255)                                                                        ccGGCGGTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGa                                                                      <  8:101738/149‑1 (MQ=255)                                                                           gCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGt                                                                   <  1:177171/149‑1 (MQ=255)                                                                             gTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGc                                                                 <  8:119525/149‑1 (MQ=255)                                                                             gTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGAGCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGc                                                                 >  3:10712/1‑149 (MQ=255)                                                                                  aGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCAACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAAc                                                            >  1:60126/1‑149 (MQ=255)                                                                                      gggggCCACCCTGTCAGCCTAGCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATc                                                        <  2:280669/149‑1 (MQ=255)                                                                                           ccACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCaa                                                   <  7:193746/149‑1 (MQ=255)                                                                                            cACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAg                                                  >  8:208542/1‑149 (MQ=255)                                                                                                       ccTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTg                                       >  4:101728/1‑149 (MQ=255)                                                                                                         tACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCt                                     >  7:239030/1‑149 (MQ=255)                                                                                                             ttGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATc                                 >  7:58944/1‑149 (MQ=255)                                                                                                               cagcagcggcccaccatcggcggtagcgcgacgctgctGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGc                               >  2:135177‑M2/39‑149 (MQ=255)                                                                                                                 gcagcggcccaccatcggcggtagcgcgacgctgctGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCaa                                                   <  6:119114‑M2/91‑1 (MQ=255)                                                                                                                 gcagcggcccaccatcggcggtagcgcgacgctgctGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCaa                                                   >  5:119114‑M2/37‑127 (MQ=255)                                                                                                                  cagcggcccaccatcggcggtagcgcgacgctgctGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTgc                            <  1:135177‑M2/114‑1 (MQ=255)                                                                                                                  CAGCGTCGCGCTACCGACGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑TCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTgc                            <  6:56677‑M1/149‑1 (MQ=255)                                                                                                                         gcgcTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCaa                      <  7:208542/148‑1 (MQ=255)                                                                                                                            cTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGATGCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCAATAg                   >  1:241253/1‑149 (MQ=255)                                                                                                                               ccgccgATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCAATAGTGCg               >  8:191519/1‑149 (MQ=255)                                                                                                                                      tggtggGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCAATAGTGCGGCATTGc        <  2:60126/149‑1 (MQ=255)                                                                                                                                              cgctgctGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCAATAGTGCGGCATTGCACCGTg  >  6:237352‑M2/8‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                             ACCTGGATAACCTGCGCAAGCGCCTGCAAGAGTTGCTGCTGGCCGTTGGCGAGGAGATCGCCTGCCCGGTACCGGCGTTGCAGGCGGGGGCCACCCTGTCAGCCTACCTTGAGCAGCGTCGCGCTACCGCCGATGGTGGGCCGCTGCTGGCCGATGTGCAGGTTGCGATCAATCGA‑GCGCTGAACCCCCAGGGCCTGAACCTCAGGGTGCTCGAAGAGGAAGTGCGTAACGATCCGCAAGTTACGGCGGTGCTGATCGCTGCCGCCAATAGTGCGGCATTGCACCGTG  >  NC_002947/266628‑266915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.