New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 63696463 (1.280)4 (0.080) 4/248 NT 6.1% coding (1188/1350 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
?NC_002947 = 636999 63 (1.320)coding (1223/1350 nt) mpl UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase

CACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCA  >  NC_002947/636852‑637141
                                                                                                                                                   |                                                                                                                                                 
cACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAATCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTg                                                                                                                                                  >  6:259385‑M2/1‑148 (MQ=255)
cACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTg                                                                                                                                                  >  5:308606‑M2/1‑148 (MQ=255)
   gCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTg                                                                                                                                                  >  4:26339‑M2/1‑145 (MQ=255)
   gCTCAAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTg                                                                                                                                                  <  3:26339‑M2/146‑2 (MQ=255)
       cAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATa                                                                                                                                           <  5:47342/149‑1 (MQ=255)
        aaCTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAg                                                                                                                                          >  6:132963/1‑149 (MQ=255)
          cTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGcc                                                                                                                                        <  1:53628/149‑1 (MQ=255)
          cTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGcc                                                                                                                                        >  4:170929/1‑149 (MQ=255)
             gATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTc                                                                                                                                      <  6:48900/148‑1 (MQ=255)
             gATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTc                                                                                                                                      <  8:222284/148‑1 (MQ=255)
             gATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTc                                                                                                                                      >  3:223824/1‑148 (MQ=255)
              aTGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGa                                                                                                                                    <  1:11150/149‑1 (MQ=255)
               tGAAGCTTGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGaa                                                                                                                                   <  8:93428/149‑1 (MQ=255)
                   gCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGa                                                                                                                               >  3:90243/1‑149 (MQ=255)
                   gCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCATCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGa                                                                                                                               >  2:232200/1‑149 (MQ=255)
                     tCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGat                                                                                                                              >  4:93490/1‑148 (MQ=255)
                          gcCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGatcatc                                                                                                                          >  5:13418/1‑147 (MQ=255)
                              aTCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCgg                                                                                                                    <  3:170929/149‑1 (MQ=255)
                                    aCGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCaa                                                                                                               <  1:222602/148‑1 (MQ=255)
                                       gCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGaa                                                                                                                                   >  4:36889/1‑125 (MQ=255)
                                       gCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGaa                                                                                                                                   <  3:36889/125‑1 (MQ=255)
                                         cTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCg                                                                                                                                <  6:61834/126‑1 (MQ=255)
                                         cTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCg                                                                                                                                >  5:61834/1‑126 (MQ=255)
                                          tGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTg                                                                                                                                                  >  6:124772‑M2/1‑106 (MQ=255)
                                          tGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTg                                                                                                                                                  <  5:124772‑M2/107‑2 (MQ=255)
                                          tGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAg                                                                                                        >  8:186172/1‑149 (MQ=255)
                                           gCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAgg                                                                                                       >  2:217950/1‑149 (MQ=255)
                                            ccAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAgg                                                                                                       <  4:222306/148‑1 (MQ=255)
                                            ccAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGc                                                                                                      <  6:13418/149‑1 (MQ=255)
                                              aGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGatcatc                                                                                                                          <  6:77941/127‑1 (MQ=255)
                                              aGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGatcatc                                                                                                                          >  5:77941/1‑127 (MQ=255)
                                                 aaGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGcc                                                                                                 <  4:130260/149‑1 (MQ=255)
                                                        aaCGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CAc                                                                                       >  2:98502/1‑149 (MQ=255)
                                                         acgacgCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CAcc                                                                                      >  3:194355/1‑149 (MQ=255)
                                                              gCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAggt                                                                                 >  6:74213/1‑149 (MQ=255)
                                                               cTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAggtg                                                                                <  4:223824/149‑1 (MQ=255)
                                                                tGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCAAggtgg                                                                               >  4:67695/1‑149 (MQ=255)
                                                                  aCCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAggtggt                                                                              <  5:74213/148‑1 (MQ=255)
                                                                   ccATGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATGATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGa                                                                            <  4:233393/149‑1 (MQ=255)
                                                                   ccAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGa                                                                            >  1:291846/1‑149 (MQ=255)
                                                                    cAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGAt                                                                           <  4:211597/149‑1 (MQ=255)
                                                                      ggTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGCAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCa                                                                         >  2:230089/1‑149 (MQ=255)
                                                                       gTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCAt                                                                        <  3:93490/149‑1 (MQ=255)
                                                                          aTCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGa                                                                      <  1:86339/148‑1 (MQ=255)
                                                                               gTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCACTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAAcg                                                                >  7:155877/1‑149 (MQ=255)
                                                                                     gcCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAggtgg                                                                               >  5:58154/1‑128 (MQ=255)
                                                                                     gcCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAggtgg                                                                               <  6:58154/128‑1 (MQ=255)
                                                                                        ggCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTcg                                                       <  5:212533/149‑1 (MQ=255)
                                                                                        ggCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTcg                                                       >  6:212533/1‑149 (MQ=255)
                                                                                          ccAAACTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTAAAAGGTCAGGCTCGACAAGG‑‑‑AACCCAGGTGGTGATCATTAGCAACGTCGGATTcggc                                                     >  2:230867/1‑149 (MQ=255)
                                                                                             aCCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCggcggc                                                  <  7:186172/149‑1 (MQ=255)
                                                                                              ccTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGcc                                                 >  5:103472/1‑149 (MQ=255)
                                                                                                tCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CAc                                                                                       <  2:55988/109‑1 (MQ=255)
                                                                                                tCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CAc                                                                                       >  1:55988/1‑109 (MQ=255)
                                                                                                   gCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCTGCGGCCTGCAc                                            >  3:245511/1‑149 (MQ=255)
                                                                                                            tGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTggccaggtcccagccgaggttggccggcgcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgccgagc                                                     >  3:124032‑M2/1‑40 (MQ=255)
                                                                                                            tGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTggccaggtcccagccgaggttggccggcgcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgccgagc                                                     <  4:124032‑M2/134‑95 (MQ=255)
                                                                                                            tGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCa                                                                                                         >  4:156451/1‑82 (MQ=255)
                                                                                                               ccgccACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTggccagggcccagccgaggttggccggcgcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgcagagcttcatcgaggtggagcgg                                   <  6:197936‑M2/149‑113 (MQ=255)
                                                                                                                cgccACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGcc                                >  3:46522/1‑148 (MQ=255)
                                                                                                                 gccACCGATGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAACGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGGGGTGATCATGAGCAACGGAGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGa                              <  1:230867/149‑1 (MQ=255)
                                                                                                                   cACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTggccaggtcccagccgaggttggccggcgcataccagatcacctggtcagcgtcgttgacgctttctggcaggccgtcacgatgggcgccgagcttcatcgagttggagcgtggct                               <  7:128616‑M2/149‑117 (MQ=255)
                                                                                                                   cACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAgg                            <  4:90243/149‑1 (MQ=255)
                                                                                                                    aCCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCTCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGgc                           >  5:84083/1‑149 (MQ=255)
                                                                                                                      cGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGgcgc                         >  2:253883/1‑149 (MQ=255)
                                                                                                                            gcAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGt                   <  2:291846/149‑1 (MQ=255)
                                                                                                                             cAGTGCAAGGTGCCGTTCGTGGTGGCCGATAGCCTCGAAGCGATCATCGCTCGGGTCAAATGTCAGGCTCGCCCATGCTCCTCCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGaa                     <  1:98502/149‑1 (MQ=255)
                                                                                                                                  cAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACgg             >  4:295345/1‑149 (MQ=255)
                                                                                                                                   aaGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACggg            <  1:217950/149‑1 (MQ=255)
                                                                                                                                          cGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAAc     >  8:183201/1‑149 (MQ=255)
                                                                                                                                          cGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAAc     <  5:132963/149‑1 (MQ=255)
                                                                                                                                          cGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAAc     <  1:232200/149‑1 (MQ=255)
                                                                                                                                            aGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCTCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGc   <  6:84083/149‑1 (MQ=255)
                                                                                                                                            aGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACg    >  8:59818/1‑148 (MQ=255)
                                                                                                                                             gCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCa  <  6:103472/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
CACGCTCCAACTCGATGAAGCTCGGCGCCCATCGTGACGGCCTGCCAGAAAGCGTCAACGACGCTGACCAGGTGATCTGGTATGCGCCGGCCAACCTCGGCTGGGACCTGGCCGCCACCGCTGCGCAGTGCAAGGTGCCGAGCGTGGTGGCCGATAGCCTCGAAGCGATCATCGAGCGGGTCAAAGGTCAGGCTCGCCCAGG‑‑‑CACCCAGGTGGTGATCATGAGCAACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCGAGGCGCTGAAGTGAACGGGCCGGAACGCA  >  NC_002947/636852‑637141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.