New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1723318 =	30 (0.610)	4 (0.080)	3/248	NT	11.8%	coding (1951/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	1723400 =	31 (0.650)					coding (2033/3066 nt)	PP_1517	RND family transporter

TGCTGGCCAAGTCGATGGAAGACCGCGAGCGCCTGCGCAGTTGGCTGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGACCAGGACCGCGCCCGTGCGCTG  >  NC_002947/1723253‑1723548                                                                                                                                                    |                                                                                                                                                     tgCTGGCCAAGTCGATGGAAGACCGCGAGCGCCTGCGCAGTTGGCTGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGc                                                                                                                                                     >  1:294501/1‑149 (MQ=255)    tGGCCAAGTCGATGGAAGACCGCGAGCGCCTGCGCAGTTGGCTGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAg                                                                                                                                                  >  2:18128/1‑149 (MQ=255)         aaGTCGATGGAAGTCCGCGAGCGGCTGCGCAGTTGGCTGATCAGCACGGTGTACCAGCAGTTCCCCGACCTGCGCGCCGGGGTCAAGCGCCTTGTAAACGGCCCGCGCGTGGTCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCatat                                                                                                                                             <  8:123602/149‑1 (MQ=255)              gATGGAAGACCGCGAGCGCCTGCGCAGTTGGCTGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCgag                                                                                                                                         >  1:106952/1‑148 (MQ=255)                                  tGCGCAGTTGGCTGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGt                                                                                                                    >  3:17884/1‑149 (MQ=255)                                              tGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGa                                                                                                         >  4:32168/1‑148 (MQ=255)                                                   aGCACGGTGGACCAGCAGTTCCCCGACCTGGGCGCCCGGGTCACGCGCCTGGAAAACGGCGCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAg                                                                                                     <  3:48087/147‑1 (MQ=255)                                                   aGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTTCACTGGCCCGTGAAGTGGCGGACAAGGt                                                                                                   <  1:18128/149‑1 (MQ=255)                                                   aGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAg                                                                                                     >  4:48087/1‑147 (MQ=255)                                                   aGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGt                                                                                                   >  7:36192/1‑149 (MQ=255)                                                    gCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCTCTGGCCCGTGAAGTGGCGGACAAGGTg                                                                                                  >  8:95920/1‑149 (MQ=255)                                                        ggTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGAc                                                                                                        <  8:51705/139‑1 (MQ=255)                                                        ggTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGAc                                                                                                        >  7:51705/1‑139 (MQ=255)                                                         gTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATCTCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCga                                                                                             <  6:204166/149‑1 (MQ=255)                                                               cagcagTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAAccc                                                                                       >  5:62553/1‑149 (MQ=255)                                                                  cagtgacccggaactgcaccgggtagcccacgggcgggccgttttccaggcgcgtgacccgggcgcgcaggtcggggaactgGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCa                                                                                    >  8:172877‑M2/83‑149 (MQ=255)                                                                  cagtgacccggaactgcaccgggtagcccacgggcgggccgttttccaggcgcgtgacccgggcgcgcaggtcggggaactgGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCa                                                                                    >  5:160627‑M2/83‑149 (MQ=255)                                                                     TTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCgaga                                                                                                                                        <  1:180018‑M1/94‑1 (MQ=255)                                                                     TTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCgaga                                                                                                                                        >  2:180018‑M1/1‑94 (MQ=255)                                                                            aCCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAAc                                                                          <  6:62553/149‑1 (MQ=255)                                                                                  gcgcCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCAc                                                                    <  3:32168/149‑1 (MQ=255)                                                                                     cccGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTg                                                                 <  2:106952/149‑1 (MQ=255)                                                                                      ccGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTg                                                                 >  6:257266/1‑148 (MQ=255)                                                                                        gggTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGAc                                                              >  4:145583/1‑149 (MQ=255)                                                                                            cccacgggcgggccgttttccaggcgcgtgacccgggcgcgcaggtcggggaactgGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTggg                                                          <  7:172877‑M2/93‑1 (MQ=255)                                                                                             aCGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTggg                                                          >  3:189799/1‑148 (MQ=255)                                                                                               gcgcCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTggg                                                          >  3:50358/1‑146 (MQ=255)                                                                                                 gggcgggccgttttccaggcgcgtgacccgggcgcgcaggtcggggaactgGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGgaagaa                                                     <  6:160627‑M2/98‑1 (MQ=255)                                                                                                    tGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAAcc                                                   >  3:301967/1‑148 (MQ=255)                                                                                                           cGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAgg                                           <  5:257266/149‑1 (MQ=255)                                                                                                            ggCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTggg                                                          >  4:8976/1‑133 (MQ=255)                                                                                                            ggCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTggg                                                          <  3:8976/133‑1 (MQ=255)                                                                                                              cccgcccgTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCgg                                        >  6:75936/1‑149 (MQ=255)                                                                                                                  cccgTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGtt                                    >  4:386/1‑149 (MQ=255)                                                                                                                       gggCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCg                               <  4:189799/149‑1 (MQ=255)                                                                                                                        ggCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCg                               <  5:204641/148‑1 (MQ=255)                                                                                                                          cTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGaaa                            <  3:151944/149‑1 (MQ=255)                                                                                                                               cGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGAc                       <  4:50358/149‑1 (MQ=255)                                                                                                                                          cGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGACCAGGACCgcgc            <  5:75936/149‑1 (MQ=255)                                                                                                                                             gTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGACCAGGACCGCGCCCg         <  8:36192/149‑1 (MQ=255)                                                                                                                                                    gCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGACCAGGACCGCGCCCGTGCGCTg  >  4:31497/1‑149 (MQ=255)                                                                                                                                                    gCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGACCAGGACCGCGCCCGTGCGCTg  <  3:31497/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGCTGGCCAAGTCGATGGAAGACCGCGAGCGCCTGCGCAGTTGGCTGATCAGCACGGTGGACCAGCAGTTCCCCGACCTGCGCGCCCGGGTCACGCGCCTGGAAAACGGCCCGCCCGTGGGCTACCCGGTGCAGTTCCGGGTCACTGGCGAGCATATCGAGAAGGCCCGTGCACTGGCCCGTGAAGTGGCGGACAAGGTGCGCGAGAACCCGCATGTGGTGAACGTGCACCTGGACTGGGAAGAACCCAGCAAGGCGGTGTTCCTCGAAATCGACCAGGACCGCGCCCGTGCGCTG  >  NC_002947/1723253‑1723548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.