New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2275170 =	67 (1.360)	5 (0.110)	5/240	NT	8.5%	coding (320/1119 nt)	PP_2005	hypothetical protein
	?	NC_002947	2275244 =	45 (0.970)					coding (246/1119 nt)	PP_2005	hypothetical protein

CGGGTTGCTCAGTTCCAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGCCATGGTTAAGCGCCAGTTCGATGCGCAGG  >  NC_002947/2275097‑2275385                                                                                                                                                     |                                                                                                                                              cactgctgtaccccggcgactatcaaaacctgcaacgcctgcaccgcaagctcgcagcctatctggagcaagccCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCgg                                                                                                                                               >  2:139727‑M1/75‑149 (MQ=255)        cTCAGTTCCAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCTGAAACTCCGCCCGCCCACAGCCAGGTACAGATGTGTTCCGGCAGCACCACCACGGTGCCCGGGTTCACCAGGCCTTGGGCGCGGGCATGCt                                                                                                                                        >  1:249143/1‑149 (MQ=255)        cTCAGTTCCAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTc                                                                                                                                       >  4:139173/1‑149 (MQ=255)         tCAGTTCCAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTc                                                                                                                                       >  1:141508/1‑148 (MQ=255)         tCAGTTCCAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTc                                                                                                                                       >  3:179301/1‑148 (MQ=255)               ccAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATa                                                                                                                                 <  2:88885/148‑1 (MQ=255)                cAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAgg                                                                                                                               >  1:99861/1‑149 (MQ=255)                 aGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGc                                                                                                                              >  1:268779/1‑149 (MQ=255)                    cATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGc                                                                                                                           >  6:77172/1‑149 (MQ=255)                    cATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGc                                                                                                                           >  3:33087/1‑149 (MQ=255)                           gggCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTg                                                                                                                    >  2:263901/1‑149 (MQ=255)                                   tGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAg                                                                                                            <  4:32056/149‑1 (MQ=255)                                    ggCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCa                                                                                                             <  3:239407/147‑1 (MQ=255)                                    ggCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCa                                                                                                             >  4:239407/1‑147 (MQ=255)                                     gCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAgg                                                                                                           <  6:186290/148‑1 (MQ=255)                                         tGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGtt                                                                                                       <  5:77172/148‑1 (MQ=255)                                          gggTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTg                                                                                                      <  2:249143/148‑1 (MQ=255)                                           ggTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTg                                                                                                      >  5:24377/1‑147 (MQ=255)                                            gTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAg                                                                                                   >  7:237996/1‑149 (MQ=255)                                                cTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGttt                                                                                               <  6:22481/149‑1 (MQ=255)                                                cTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGttt                                                                                               >  1:204714/1‑149 (MQ=255)                                                   gATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAg                                                                                                            >  1:269996/1‑133 (MQ=255)                                                   gATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAg                                                                                                            <  2:269996/133‑1 (MQ=255)                                                    aTACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGa                                                                                            <  8:46722/148‑1 (MQ=255)                                                    aTACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGa                                                                                            <  8:237996/148‑1 (MQ=255)                                                    aTACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGAt                                                                                           <  7:85499/149‑1 (MQ=255)                                                       cAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAg                                                                                         <  2:204714/148‑1 (MQ=255)                                                          cTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGc                                                                                     >  8:286399/1‑149 (MQ=255)                                                             gTTCT‑TCTCTCCGCGCTGCCTCTGCAAGGTACCGATGTGTTCCGGCAGCAGCACCACGGTGCGCGGGTTCACCAGGCCTTGGGGGCGGGCTTGCTCCAGATAGGCTGAGAGCTTGCGGTGCTGGCGTTGCAGGTTTTGATTGTCGCCg                                                                                   <  8:278096/148‑1 (MQ=255)                                                              ttct‑tcTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCggg                                                                                 <  2:268779/149‑1 (MQ=255)                                                                 t‑tctCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTa                                                                              >  3:130329/1‑149 (MQ=255)                                                                     tctcCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTAcag                                                                           >  6:182142/1‑149 (MQ=255)                                                                          gcgcgcCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTg                                                                      <  4:33087/149‑1 (MQ=255)                                                                          ccgcgcccaaggcctggtgaacccgcgcaccgtggtggtgctgccggaacacatcggtacctggctgtgggcgcgGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTg                                                                      >  2:139727‑M2/76‑149 (MQ=255)                                                                           cgcgcccaaggcctggtgaacccgcgcaccgtggtggtgctgccggaacacatcggtacctggctgtgggcgcgGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTgg                                                                     >  8:173707‑M2/75‑149 (MQ=255)                                                                           CGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTgg                                                                     <  4:76051‑M1/149‑1 (MQ=255)                                                                              gcccaaggcctggtgaacccgcgcaccgtggtggtgctgccggaacacatcggtacctggctgtgggcgcgGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTc                                                                  <  7:173707‑M2/78‑1 (MQ=255)                                                                              GCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTc                                                                  >  4:95623‑M1/1‑149 (MQ=255)                                                                               CCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCg                                                                 >  7:286399‑M1/1‑149 (MQ=255)                                                                                   caGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGacac                                                             <  4:179301/149‑1 (MQ=255)                                                                                   aggcctggtgaacccgcgcaccgtggtggtgctgccggaacacatcggtacctggctgtgggcgcgGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGacac                                                             >  3:125896‑M2/67‑149 (MQ=255)                                                                                           tACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAgg                                                     <  3:76051/149‑1 (MQ=255)                                                                                               gATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGc                                                 >  8:100035/1‑149 (MQ=255)                                                                                                 tgtgTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCTCCACCGAGCAGGTTGCCg                                               >  8:271893/1‑149 (MQ=255)                                                                                                    gtTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGt                                                                       >  2:212952/1‑122 (MQ=255)                                                                                                    gtTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGt                                                                       <  1:212952/122‑1 (MQ=255)                                                                                                    gtTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGc                                            >  5:242049/1‑149 (MQ=255)                                                                                                            agcaCCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCgg                                    <  2:141508/149‑1 (MQ=255)                                                                                                             gcaCCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCgg                                    >  2:51401/1‑148 (MQ=255)                                                                                                                ccaccacGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACg                                >  8:196088/1‑149 (MQ=255)                                                                                                                 caccacGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGc                               <  2:99861/149‑1 (MQ=255)                                                                                                                  accacGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGcc                              <  5:182142/149‑1 (MQ=255)                                                                                                                                    aCCAGGCCTTGGGCGCTGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTTGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGCCATGGTTAAGCGCCAGtt             <  6:24377/148‑1 (MQ=255)                                                                                                                                     cctggctgtgggcgcgGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGCCATGGTTAAGCGCCAGTTc            <  1:139727‑M2/132‑1 (MQ=255)                                                                                                                                              gggcgcgGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGCCATGGTTAAGCGCCAGTTCGATGCGCAgg  >  2:146933‑M2/8‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                              CGGGTTGCTCAGTTCCAGCCATTGTCGGGCTTCGTGGCTTTGGGTGACTTGATACAGCTCGTTCT‑TCTCTCCGCGCGCCCACAGCCAGGTACCGATGTGTTCCGGCAGCACCACCACGGTGCGCGGGTTCACCAGGCCTTGGGCGCGGGCTTGCTCCAGATAGGCTGCGAGCTTGCGGTGCAGGCGTTGCAGGTTTTGATAGTCGCCGGGGTACAGCAGTGGTTCGACACCGAGCAGGTTGCCGTGCTCGCCCGGTACGCCATGGTTAAGCGCCAGTTCGATGCGCAGG  >  NC_002947/2275097‑2275385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.