New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2357931 =	54 (1.090)	4 (0.090)	4/238	NT	7.8%	coding (380/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	2357977 =	45 (0.980)					coding (334/825 nt)	PP_2072	AraC family transcriptional regulator

GCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTG  >  NC_002947/2357833‑2358124                                                                                                                                                 |                                                                                                                                                    gCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAg                                                                                                                                                 <  5:27647/149‑1 (MQ=255)   ttGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTATTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGAGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGCTGAAggg                                                                                                                                               >  6:157570/1‑149 (MQ=255)     gccgccGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGc                                                                                                                                              <  1:31031/148‑1 (MQ=255)     atggccggcaccgacgcaggctttcgctaccgcatggcctacgtcgacccggcactgatccagaacgtgctgggtggtcagcctttgcccttcaTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATg                                                                                                                                                    >  4:22857‑M1/95‑142 (MQ=255)     atggccggcaccgacgcaggctttcgctaccgcatggcctacgtcgacccggcactgatccagaacgtgctgggtggtcagcctttgcccttcaTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATg                                                                                                                                                    <  3:22857‑M1/48‑1 (MQ=255)       cgccgACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGGTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCa                                                                                                                                             >  1:258797/1‑147 (MQ=255)           gACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCt                                                                                                                                       <  2:303719/149‑1 (MQ=255)            aCGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCt                                                                                                                                       >  7:148904/1‑148 (MQ=255)              ggCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGac                                                                                                                                    <  1:187334/149‑1 (MQ=255)              ggCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGac                                                                                                                                    <  8:148904/149‑1 (MQ=255)              ggCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGac                                                                                                                                    <  2:258797/149‑1 (MQ=255)               gCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGac                                                                                                                                    >  3:114340/1‑148 (MQ=255)               gCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGac                                                                                                                                    >  3:14751/1‑148 (MQ=255)                cccGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGacca                                                                                                                                  <  6:9142/149‑1 (MQ=255)                 ccGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGaccac                                                                                                                                 <  4:14751/149‑1 (MQ=255)                 ccGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGa                                                                                                                                     >  3:247780/1‑145 (MQ=255)                 ccGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGa                                                                                                                                     <  4:247780/145‑1 (MQ=255)                        gCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCAc                                                                                                                          <  5:241879/149‑1 (MQ=255)                            tCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTc                                                                                                                      <  5:199808/149‑1 (MQ=255)                              gCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTg                                                                                                                    >  3:112978/1‑149 (MQ=255)                               ccAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTg                                                                                                                    >  7:207124/1‑148 (MQ=255)                                   gTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGAt                                                                                                                 >  6:278425/1‑147 (MQ=255)                                         cAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGCGCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGcc                                                                                                          <  8:257128/148‑1 (MQ=255)                                                 ccTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCt                                                                                                                                       <  5:122115/111‑1 (MQ=255)                                                 ccTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCt                                                                                                                                       >  6:122115/1‑111 (MQ=255)                                                     ttcttcCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTa                                                                                               <  4:112978/147‑1 (MQ=255)                                                       cttcCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGGCGACGTAGGc                                                                                            <  6:222451/148‑1 (MQ=255)                                                          ccAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATg                                                                                        >  2:276234/1‑149 (MQ=255)                                                           cAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATg                                                                                        <  8:207124/148‑1 (MQ=255)                                                            aaTGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCg                                                                                      >  7:144995/1‑149 (MQ=255)                                                            aaTGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCg                                                                                      >  6:53082/1‑149 (MQ=255)                                                              tGGTTCCAGCGCGTGGTCCACTTCCTGTACGAACGCTTCGCTGGCGTGGTACAGACTCGGGTCGCTGGACAGCCCGCCAGCGATGAAGTGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGt                                                                                    <  5:157570/149‑1 (MQ=255)                                                                 ttCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGc                                                                                 <  8:144995/149‑1 (MQ=255)                                                                  tCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGc                                                                                 >  3:104753/1‑148 (MQ=255)                                                                     accgcgTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGaaa                                                                             <  5:278425/147‑1 (MQ=255)                                                                     aGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATg                                                                                        <  8:213946/138‑1 (MQ=255)                                                                     aGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATg                                                                                        >  7:213946/1‑138 (MQ=255)                                                                            ggTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCGGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCg                                                                      >  7:64460/1‑149 (MQ=255)                                                                                         tACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCa                                                         >  8:193874/1‑149 (MQ=255)                                                                                              aCGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCg                                                    <  1:276234/149‑1 (MQ=255)                                                                                                 catcgctggcgggctgtccagcgacccgcgtctgtaccacgccagcgaTGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCAt                                                        >  4:22857‑M2/49‑142 (MQ=255)                                                                                                 catcgctggcgggctgtccagcgacccgcgtctgtaccacgccagcgaTGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCAt                                                        <  3:22857‑M2/94‑1 (MQ=255)                                                                                                      ctggcgggctgtccagcgacccgcgtctgtaccacgccagcgaTGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCgg                                                                                                        >  5:84460‑M2/44‑89 (MQ=255)                                                                                                      ctggcgggctgtccagcgacccgcgtctgtaccacgccagcgaTGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCgg                                                                                                        <  6:84460‑M2/46‑1 (MQ=255)                                                                                                            tGGTACAGACGCGGGTCGCGGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTc                                      <  8:46825/149‑1 (MQ=255)                                                                                                              gTACAGACGCGGGTCGCTGGACAGCCCGCCGGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTcc                                     <  8:64460/148‑1 (MQ=255)                                                                                                               tACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCgg                                   <  2:258273/149‑1 (MQ=255)                                                                                                               tACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCgg                                   >  1:258273/1‑149 (MQ=255)                                                                                                                   gACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTgc                               <  7:193470/149‑1 (MQ=255)                                                                                                                    aCGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGc                                                      >  7:228170/1‑125 (MQ=255)                                                                                                                    aCGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGc                                                      <  8:228170/125‑1 (MQ=255)                                                                                                                        gggTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCAc                          >  8:277039/1‑149 (MQ=255)                                                                                                                                                aTGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTg  >  3:293107‑M2/2‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCTTGCCGCCGACGGCCCGCAAGGCGATCGCCAGGTCATACAGGGCGTCCTGTTCTTCCAATGGTTCCAGCGCGTGGTCCACTGCCTGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTG  >  NC_002947/2357833‑2358124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.