New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2597695	57 (1.150)	4 (0.090)	4/242	NT	7.6%	coding (70/753 nt)	PP_2276	exonuclease
	?	NC_002947	= 2597753	44 (0.940)					coding (128/753 nt)	PP_2276	exonuclease

AGACCTGACAGAGATTCGCGAGTGCGCAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCGTAGCAAGACCGTCCAG  >  NC_002947/2597605‑2597901                                                                                                                                                     |                                                                                                                                                     agaCCTGACAGAGATTCGCGAGTGCGCAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAaga                                                                                                                                                      <  4:298738/149‑1 (MQ=255)        aCAGAGATTCGCGAGTGCGCAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAggatgg                                                                                                                                                >  4:194879‑M2/1‑142 (MQ=255)          agagATTCGCGAGTGCGCAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCg                                                                                                                                              >  1:5939/1‑148 (MQ=255)                         cgcAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCg                                                                                                                               <  5:270385/148‑1 (MQ=255)                           cAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGa                                                                                                                            >  6:80132/1‑149 (MQ=255)                              cgatctcatcGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGa                                                                                                                            <  3:266104/141‑1 (MQ=255)                                  atcatcGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCTCCTTCACCGGGATGGTGc                                                                                                                      <  2:217627/148‑1 (MQ=255)                                     atcGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGa                                                                                                                            >  4:266104/1‑139 (MQ=255)                                         aCGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACtt                                                                                                               >  8:6341/1‑148 (MQ=255)                                          cGCCGATTTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAATGCCTTCCGGTGGGGAGGCGATGAGGAGTGTGAACGAGCCCTGTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGa                                                                                                             <  6:235875/149‑1 (MQ=255)                                              gATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATaga                                                                                                         <  5:80132/149‑1 (MQ=255)                                              gATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATaga                                                                                                         >  7:212809/1‑149 (MQ=255)                                                    cTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATagacaaga                                                                                                    >  7:190685/1‑148 (MQ=255)                                                      aTCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAg                                                                                                 >  2:63081/1‑149 (MQ=255)                                                       tCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAgg                                                                                                <  8:190685/149‑1 (MQ=255)                                                          gTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATagacaa                                                                                                      <  4:91619/140‑1 (MQ=255)                                                          gTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATagacaa                                                                                                      <  4:87347/140‑1 (MQ=255)                                                          gTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATagacaa                                                                                                      >  3:87347/1‑140 (MQ=255)                                                          gTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATagacaa                                                                                                      >  3:91619/1‑140 (MQ=255)                                                             cAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGa                                                                                          >  3:98316/1‑149 (MQ=255)                                                                    cagTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGcc                                                                                   >  7:78170/1‑149 (MQ=255)                                                                      gtagtaAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGccgt                                                                                 >  2:213387/1‑147 (MQ=255)                                                                         gtaAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCcttct                                                                              <  8:176696/149‑1 (MQ=255)                                                                           aaaCCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCcttctt                                                                             <  7:6341/148‑1 (MQ=255)                                                                            aaCCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGt                                                                           >  6:123862/1‑149 (MQ=255)                                                                             aCCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGtt                                                                          <  3:215821/149‑1 (MQ=255)                                                                              ccAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAggatggctttctggtttactactgctgcttggacggataggacatcggcgtcgatgataactctgcgcactcgcgaa                                                                         <  1:116252‑M2/149‑78 (MQ=255)                                                                                aGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAggatggctttctggtttactactgctgcttggacggataggacatcggcgtcgatgataactctgcgcactcgcgaatc                                                                       <  3:98458‑M2/149‑80 (MQ=255)                                                                                 gAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTtct                                                                      >  5:323122/1‑149 (MQ=255)                                                                                  aaaGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTtctc                                                                     <  1:34397/149‑1 (MQ=255)                                                                                   aaGCCATCCGCTGGGGAGGCGATGAGGAGTGTGAAAGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCg                                                                    <  2:245627/149‑1 (MQ=255)                                                                                        aTCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGAc                                                                 >  7:182908/1‑147 (MQ=255)                                                                                         tCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAg                                                              <  3:63840/149‑1 (MQ=255)                                                                                                 ggAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGAACAAGGTGAACTg                                                      <  4:98316/149‑1 (MQ=255)                                                                                                  gAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAggatggctttctggtttactactgctgcttggacggataggacatcggcgtcgatgataactctgcgcactcgcgaatctctgtcaggtcttcttgg                                                     >  2:116252‑M2/1‑52 (MQ=255)                                                                                                   aGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGgc                                                    <  5:123862/149‑1 (MQ=255)                                                                                                    ggCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAggatggctttctggtttactactgctgcttggacggataggacatcggcgtcgatgataactctgcgcactcgcgaatctctgtcaggtcttcttggaa                                                   >  4:98458‑M2/1‑50 (MQ=255)                                                                                                            ggaggGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCg                                           >  8:61490/1‑149 (MQ=255)                                                                                                              aggGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGtt                                         <  7:61490/149‑1 (MQ=255)                                                                                                                  tGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTcc                                     >  1:22442/1‑149 (MQ=255)                                                                                                                        aGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGTATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCt                               <  8:212809/149‑1 (MQ=255)                                                                                                                          cccTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTAc                             <  8:182908/149‑1 (MQ=255)                                                                                                                            ctctGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGAGGGCGCAAAACTTGAAAGACAAGACAGGGGCCGCTGAGGCCCTTCTTGTTTTCTCGGACAACGTGAACTGGCGCACGACCGTTCTCCCGACCTACaa                           <  2:5939/149‑1 (MQ=255)                                                                                                                                ggACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGa                                              <  6:273767/126‑1 (MQ=255)                                                                                                                                ggACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGa                                              >  5:273767/1‑126 (MQ=255)                                                                                                                                   cccTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAAc                    <  6:323122/149‑1 (MQ=255)                                                                                                                                      tCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTccc                                    >  6:34310/1‑130 (MQ=255)                                                                                                                                      tCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCg                  >  6:35766/1‑148 (MQ=255)                                                                                                                                        cACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCGTa                <  6:208752/148‑1 (MQ=255)                                                                                                                                         aCGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCGTAGc              <  2:22442/149‑1 (MQ=255)                                                                                                                                             aTTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCGTAGCAAGa          >  4:126625/1‑149 (MQ=255)                                                                                                                                                     agGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCGTAGCAAGACCGTCCAg  <  8:78170/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGACCTGACAGAGATTCGCGAGTGCGCAGAGTTATCATCGACGCCGATGTCCTATCCGTCCAAGCAGCAGTAGTAAACCAGAAAGCCATCCGCTGGGGAGGCGATGAGGAGGGTGAACGAGCCCTCTGGACCCTCCACGCATTTGAAGAGGATGGCGAAGCCACCTTCACCGGGATGGTGCAAAACTTGATAGACAAGACAGGGGCCGATGAGGCCCTTCTTGTTTTCTCGGACAAGGTGAACTGGCGCAAGACCGTTCTCCCGACCTACAAGCACAACCGTAGCAAGACCGTCCAG  >  NC_002947/2597605‑2597901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.