New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3289797	39 (0.790)	4 (0.090)	4/242	NT	9.3%	coding (829/1752 nt)	PP_2892	hypothetical protein
	?	NC_002947	= 3289831	41 (0.880)					coding (863/1752 nt)	PP_2892	hypothetical protein

TCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGC  >  NC_002947/3289683‑3289979                                                                                                                                                     |                                                                                                                                                     tCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGTTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCgg                                                                                                                                                      <  8:188371/149‑1 (MQ=255)         cTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGcaaggcc                                                                                                                                               <  7:208620‑M2/148‑8 (MQ=255)         cTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGcaaggcc                                                                                                                                               <  8:103396‑M2/148‑8 (MQ=255)            tttCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCaa                                                                                                                                             <  7:182909/147‑1 (MQ=255)                 aaGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGAcc                                                                                                                                      <  2:172367/149‑1 (MQ=255)                    gCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGc                                                                                                                                   <  4:28108/149‑1 (MQ=255)                         cgcgTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTg                                                                                                                              >  8:215071/1‑149 (MQ=255)                          gcgTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTgg                                                                                                                             <  8:291918/149‑1 (MQ=255)                              ggATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTc                                                                                                                          >  3:260651/1‑148 (MQ=255)                                   cttcgcCCACAGCAGCAGTGGGCGAAGAAGTCACGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTAGACCGACGTCGGGCCGCGCCGCAAGGCCAACTGGACCCGCCACTGGGTCAACCca                                                                                                                    >  6:198121/4‑149 (MQ=255)                                           aCTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCca                                                                                                            >  7:244875/1‑149 (MQ=255)                                               ctgctgTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGc                                                                                                        >  3:262264/1‑149 (MQ=255)                                                tgctgTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGc                                                                                                        >  5:285241/1‑148 (MQ=255)                                                       ggCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGCCGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTg                                                                                                >  3:26911/1‑149 (MQ=255)                                                        gCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCACCTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg                                                                                               <  7:215071/149‑1 (MQ=255)                                                        gCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTgg                                                                                               <  7:103396/149‑1 (MQ=255)                                                          gaagaaGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACCGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGa                                                                                             <  1:69650/149‑1 (MQ=255)                                                             gaagTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAAc                                                                                          <  2:241239/149‑1 (MQ=255)                                                              aagTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAAcc                                                                                         <  4:262264/149‑1 (MQ=255)                                                                   ccGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACt                                                                                    >  8:131618/1‑149 (MQ=255)                                                                    cGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTg                                                                                   >  4:292669/1‑149 (MQ=255)                                                                              tCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTc                                                                                 <  8:140346/141‑1 (MQ=255)                                                                              tCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTc                                                                                 >  7:140346/1‑141 (MQ=255)                                                                                aTCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCgcgc                                                                       <  8:208620/149‑1 (MQ=255)                                                                                    ggAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAg                                                                    >  1:89659/1‑148 (MQ=255)                                                                                        aCCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGt                                                               >  2:305013/1‑149 (MQ=255)                                                                                            gTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGc                                                           <  7:131618/149‑1 (MQ=255)                                                                                            gTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGc                                                           <  1:305013/149‑1 (MQ=255)                                                                                                  cACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTgg                                                     >  3:308855/1‑149 (MQ=255)                                                                                                         cATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGcaaggcccatggtgcgtggtttacgggtttccagatgaacatccaccgggacttcttcgcccacagcagcagtgggcgccgcatccacgcgcacgccttcgaaa                                              <  8:192842‑M2/149‑105 (MQ=255)                                                                                                          aTGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGa                                                                                             >  3:263990/1‑101 (MQ=255)                                                                                                          aTGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGa                                                                                             <  4:263990/101‑1 (MQ=255)                                                                                                           tGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGcaaggcccatggtgcgtggtttacgggtttccagatgaacatccaccgggacttcttcgcccacagcagcagtgggcgccgcatccacgcgcacgccttcgaaata                                            >  7:192842‑M2/1‑43 (MQ=255)                                                                                                               ccTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTcccc                                        >  5:90906/1‑149 (MQ=255)                                                                                                                cTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCt                                       >  3:157388/1‑149 (MQ=255)                                                                                                                   ggCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGt                                                    >  4:125234/1‑133 (MQ=255)                                                                                                                   ggCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGt                                                    <  3:125234/133‑1 (MQ=255)                                                                                                                    gCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGa                                    <  6:285241/148‑1 (MQ=255)                                                                                                                    gCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGAc                                   >  2:142240/1‑149 (MQ=255)                                                                                                                     ccTGGGCTTCTCGACCGACGTCGGGCCGCGCGGcaaggcccatggtgcgtggtttacgggtttccagatgaacatccaccgggacttcttcgcccacagcagcagtgggcgccgcatccacgcgcacgccttcgaaatagccgctcgat                                  <  5:73942‑M2/149‑117 (MQ=255)                                                                                                                      cTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGAccc                                 >  2:225898/1‑149 (MQ=255)                                                                                                                         ggCTTCTCGACCGACGTCGGGCCGCGCGGcaaggcccatggtgcgtggtttacgggtttccagatgaacatccaccgggacttcttcgcccacagcagcagtgggcgccgcatccacgcgcacgccttcgaaatagccgctcgattgca                              >  6:73942‑M2/1‑29 (MQ=255)                                                                                                                          gCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACccgccg                             >  4:184751/1‑149 (MQ=255)                                                                                                                            ttCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCt                           <  4:308855/149‑1 (MQ=255)                                                                                                                               tcGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGAc                        >  3:188947/1‑149 (MQ=255)                                                                                                                                 gaccgacGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGa                         <  1:225898/146‑1 (MQ=255)                                                                                                                                 gaccgacGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGa                         <  2:89659/146‑1 (MQ=255)                                                                                                                                     gacGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGAc                    >  5:212013/1‑147 (MQ=255)                                                                                                                                               cgcgcgGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCttt        <  8:244875/149‑1 (MQ=255)                                                                                                                                                    ggCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCcgg   <  2:198019/149‑1 (MQ=255)                                                                                                                                                     gCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCcggc  <  6:90906/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCGAGCGGCTATTTCGAAGGCGTGCGCGTGGATGCGGCGCCCACTGCTGCTGTGGGCGAAGAAGTCCCGGTGGATGTTCATCTGGAAACCCGTAAACCACGCACCATGGGCCTTGGCCTGGGCTTCTCGACCGACGTCGGGCCGCGCGGCAAGGCCAACTGGACCCGCCACTGGGTCAACCCACAAGGCCACAGCTATGGCTGGGAAACCGAACTGTCGGCCCCGCGCCAGAACGTCGGCCTGTGGTATGACATTCCCCTCGACCCGCCGCTGACCGACAAGTTGCGCTTTGCCGGC  >  NC_002947/3289683‑3289979

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.