New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3680591 =	55 (1.110)	3 (0.060)	3/250	NT	5.5%	coding (345/468 nt)	crtZ	beta‑carotene hydroxylase
	?	NC_002947	3680632 =	50 (1.040)					coding (386/468 nt)	crtZ	beta‑carotene hydroxylase

TGTGGCAGGCTATGGAGCACTGTATGTACTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTT  >  NC_002947/3680486‑3680771                                                                                                                                                    |                                                                                                                                            tgtgGCAGGCTATGGAGCACTGTCTGTACTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGCTTCCCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACgggg                                                                                                                                            <  1:90822/149‑1 (MQ=255)     gCAGGCTATGGAGCACTGTATGTACTCGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCgt                                                                                                                                       <  7:278317/149‑1 (MQ=255)           tATGGAGCACTGTATGTACTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGtt                                                                                                                                 >  3:76257/1‑149 (MQ=255)            aTGGAGCACTGTATGTACTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTc                                                                                                                                >  2:117552/1‑149 (MQ=255)                    cTGTATGTACTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGttctt                                                                                                                        <  1:117552/149‑1 (MQ=255)                     tgtatgtaCTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCCACCGC‑TACCTGAAACGCTTGCACCGCGCGCCCCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGttcttc                                                                                                                       >  8:66153/1‑149 (MQ=255)                     tgtatgtaCTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCgg                                                                                                                              <  6:38483/142‑1 (MQ=255)                     tgtatgtaCTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCgg                                                                                                                              >  5:38483/1‑142 (MQ=255)                       tatgtaCTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTtcttct                                                                                                                      <  8:124840/148‑1 (MQ=255)                        atgtaCTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTAt                                                                                                                    >  3:15238/1‑149 (MQ=255)                         tgtaCTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTAt                                                                                                                    <  7:182020/148‑1 (MQ=255)                              tGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGcgccg                                                                                                              >  5:61792/1‑149 (MQ=255)                                 cccACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGcgccgccg                                                                                                           >  4:246010/1‑149 (MQ=255)                                         ggTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGgt                                                                                                   <  4:76257/149‑1 (MQ=255)                                          gTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTAGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGgtg                                                                                                  >  5:309377/1‑149 (MQ=255)                                           tttctttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATgcgc                                                                                                                <  6:36882/134‑1 (MQ=255)                                           tttctttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATgcgc                                                                                                                >  5:36882/1‑134 (MQ=255)                                           tttctttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGaa                                                                                                      >  6:318922/1‑144 (MQ=255)                                           tttctttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGaa                                                                                                      <  5:318922/144‑1 (MQ=255)                                            ttctttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGtt                                                                                                >  3:56493/1‑149 (MQ=255)                                             tctttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGtt                                                                                                <  6:309377/148‑1 (MQ=255)                                               tttcACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTg                                                                                               >  7:274577/1‑147 (MQ=255)                                                   aCCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAagca                                                                                          <  4:15238/148‑1 (MQ=255)                                                                 cgcAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGcagcag                                                                           <  8:274577/149‑1 (MQ=255)                                                                 cgcAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGcagcag                                                                           <  1:53454/149‑1 (MQ=255)                                                                 cgcAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGcagcag                                                                           <  3:271984/149‑1 (MQ=255)                                                                       ccGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAg                                                                     <  2:14498/149‑1 (MQ=255)                                                                             ccGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATc                                                               <  3:246010/149‑1 (MQ=255)                                                                                 tCAACCGC‑TACCTGAAACGCTTGCACTGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCAGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGa                                                           >  1:168639/1‑149 (MQ=255)                                                                                 tCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGa                                                           <  4:56493/149‑1 (MQ=255)                                                                                       gC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGAc                                                          >  7:210142/1‑144 (MQ=255)                                                                                       gC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGAc                                                          <  8:210142/144‑1 (MQ=255)                                                                                          tACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCgca                                                                               >  6:168625/1‑121 (MQ=255)                                                                                          tACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCgca                                                                               <  5:168625/121‑1 (MQ=255)                                                                                               gAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCa                                              >  6:36599/1‑149 (MQ=255)                                                                                                aaaCGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCGGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGc                                               <  7:69599/147‑1 (MQ=255)                                                                                                  aCGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGtt                                                                                                <  8:272817/96‑1 (MQ=255)                                                                                                  aCGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGtt                                                                                                >  7:272817/1‑96 (MQ=255)                                                                                                    gCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGTGCAGCCAATCGTGACGCATCCCTGGCACGccc                                         >  2:23656/1‑149 (MQ=255)                                                                                                    gCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGccc                                         >  6:228217/1‑149 (MQ=255)                                                                                                          aCCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCAcc                                   >  4:154048/1‑149 (MQ=255)                                                                                                           ccgtgcgccccttcaccgcatggtgcaagcggtgcgcgcggGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCt                                  >  4:283606‑M2/42‑149 (MQ=255)                                                                                                            CGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTg                                 <  3:231474‑M1/149‑1 (MQ=255)                                                                                                                cgcACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCgg                             <  7:66153/149‑1 (MQ=255)                                                                                                                 gcACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGTGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCggg                            <  1:23656/149‑1 (MQ=255)                                                                                                                 gcACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCCGCACCAGCCggg                            >  1:314792/1‑149 (MQ=255)                                                                                                                   cccttcaccgcatggtgcaagcggtgcgcgcggGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAagca                                                                                          >  7:187549‑M2/34‑85 (MQ=255)                                                                                                                   cccttcaccgcatggtgcaagcggtgcgcgcggGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAagca                                                                                          <  8:187549‑M2/52‑1 (MQ=255)                                                                                                                     cGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATc                        <  3:154048/149‑1 (MQ=255)                                                                                                                      gCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCg                       <  6:124797/149‑1 (MQ=255)                                                                                                                          gCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCggg                     <  6:61792/147‑1 (MQ=255)                                                                                                                                tGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCa             <  4:231474/149‑1 (MQ=255)                                                                                                                                    gTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGtt          >  6:53354/1‑148 (MQ=255)                                                                                                                                     tGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCa        >  1:280387/1‑149 (MQ=255)                                                                                                                                           ggCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGttt  <  7:169192/149‑1 (MQ=255)                                                                                                                                                aCGGGGAGCGTGTCGTTCGGGTACTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGa                  <  2:14016/128‑1 (MQ=255)                                                                                                                                                aCGGGGAGCGTGTCGTTCGGGTACTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGa                  >  1:14016/1‑128 (MQ=255)                                                                                                                                                    |                                                                                                                                            TGTGGCAGGCTATGGAGCACTGTATGTACTGGCCCACGACGGTTTCTTTCACCGGCACTGGCCGCGCAAGCCGCGGCCGGTCAACCGC‑TACCTGAAACGCTTGCACCGCGCGCACCGCTTGCACCATGCGGTGAAGGGGCGCACGGGGAGCGTGTCGTTCGGGTTCTTCTATGCGCCGCCGCTGAAGGTGTTGAAGCAGCAATTGCGCAGCAGGCGCAGCCAATCGTGACGCATCCCTGGCACGCCCGGCACCTGCCGGGCATCGGGTGAAATCAGTTCACGGTTT  >  NC_002947/3680486‑3680771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.