New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4507290 =50 (1.010)4 (0.080) 3/246 NT 7.7% intergenic (+8/+99) gqr/cysG glutathionyl‑hydroquinone reductase/multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
?NC_002947 4507382 = 48 (1.010)intergenic (+100/+7) gqr/cysG glutathionyl‑hydroquinone reductase/multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase

ATGATCGAGAGCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGTGAACACGC  >  NC_002947/4507239‑4507528
                                                                                                                                                 |                                                                                                                                                   
aTGATCGAGAGCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGAt                                                                                                                                                >  6:164338/1‑149 (MQ=255)
aTGATCGAGAGCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGAt                                                                                                                                                <  7:29864/149‑1 (MQ=255)
  gATCGAGAGCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGAttt                                                                                                                                              >  2:283731/1‑149 (MQ=255)
   aTCGAGAGCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTc                                                                                                                                             <  4:305613/149‑1 (MQ=255)
       agagCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCt                                                                                                                                         >  3:248243/1‑149 (MQ=255)
       agagCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCt                                                                                                                                         <  2:244466/149‑1 (MQ=255)
          gCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGtt                                                                                                                                      <  7:45818/149‑1 (MQ=255)
             gTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTg                                                                                                                                   >  2:140304/1‑149 (MQ=255)
             gTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTg                                                                                                                                   <  4:15722/149‑1 (MQ=255)
                             aTTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCATCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAg                                                                                                                   <  8:159494/149‑1 (MQ=255)
                             aTTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAg                                                                                                                   <  8:164057/149‑1 (MQ=255)
                               ttGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCg                                                                                                                                 >  1:123/1‑133 (MQ=255)
                               ttGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCg                                                                                                                                 <  2:123/133‑1 (MQ=255)
                                tGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGc                                                                                                                 <  1:283731/148‑1 (MQ=255)
                                   cAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGc                                                                                                             <  5:164338/149‑1 (MQ=255)
                                      gCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGc                                                                                                             <  4:310559/146‑1 (MQ=255)
                                      gCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGc                                                                                                             >  3:310559/1‑146 (MQ=255)
                                        ttGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTGCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGt                                                                                                         >  1:74708/1‑149 (MQ=255)
                                                 ccGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTg                                                                                               >  3:284341/1‑149 (MQ=255)
                                                  cGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGc                                                                                              <  7:16621/149‑1 (MQ=255)
                                                  cGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGc                                                                                              <  7:11891/149‑1 (MQ=255)
                                                       ggccgctttgcggcccatcgcatatgccccaggcattgcaaggtccttgtaagagcggccttgtgttgcgatgggctgcaaagcagccccAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGcac                                                                                            >  5:10074‑M2/91‑148 (MQ=255)
                                                         gctTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTGAGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACt                                                                                        >  1:225433/1‑149 (MQ=255)
                                                                  ggcccatcgcatatgccccaggcattgcaaggtccttgtaagagcggccttgtgttgcgatgggctgcaaagcagccccAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCAAGCCAATGAACAACTTCCcaca                                                                                 >  6:166998‑M2/80‑148 (MQ=255)
                                                                    cATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATc                                                                            <  4:284341/149‑1 (MQ=255)
                                                                          aaCACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAgg                                                                      >  6:319883/1‑149 (MQ=255)
                                                                             acaAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGca                                                                                             >  8:147411/1‑123 (MQ=255)
                                                                                 ggCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGgcg                                                               >  7:186222/1‑149 (MQ=255)
                                                                                      ggcattgcaagttccttttaagagcggccttgtgtttcgatgggctgcaaagcagccccAACGATTTCATCTGTTCTGCGAACCTTCGAACCAGGCCAGATTGTCACGCAACTTCACCACTTCCCCCACAATCACCAGGGTCGGCGCAt                                                            <  5:166998‑M2/90‑1 (MQ=255)
                                                                                      ggcattgcaaggtccttgtaagagcggccttgtgttgcgatgggctgcaaagcagccccAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCAt                                                            <  6:10074‑M2/90‑1 (MQ=255)
                                                                                      ctctTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCAc                                                                                                      <  2:41963/105‑1 (MQ=255)
                                                                                      ctctTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCGTCGAACCAGGCCAGCTTGTCAc                                                                                                      >  1:41963/1‑105 (MQ=255)
                                                                                       tctTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGc                                                         >  8:84072/1‑148 (MQ=255)
                                                                                          ttACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGtt                                                                                                                                      >  5:196914/1‑70 (MQ=255)
                                                                                          ttACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGtt                                                                                                                                      <  6:196914/70‑1 (MQ=255)
                                                                                          ttACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGc                                                         <  7:84072/146‑1 (MQ=255)
                                                                                              aaGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGaa                                                                                                                       <  3:124973/81‑1 (MQ=255)
                                                                                              aaGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGaa                                                                                                                       >  4:124973/1‑81 (MQ=255)
                                                                                              aaGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCAt                                                  >  1:315432/1‑149 (MQ=255)
                                                                                                  aCCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTg                                              <  2:225433/149‑1 (MQ=255)
                                                                                                        gCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGcca                                         >  8:11530/1‑149 (MQ=255)
                                                                                                         cAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGccac                                        <  2:74708/149‑1 (MQ=255)
                                                                                                                  gggCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCAc                                                       >  6:10896/1‑125 (MQ=255)
                                                                                                                  gggCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCAc                                                       <  5:10896/125‑1 (MQ=255)
                                                                                                                  gggAATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTgg                               <  8:170233/149‑1 (MQ=255)
                                                                                                                   ggCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTgg                               >  6:226467/1‑148 (MQ=255)
                                                                                                                    gCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGc                                           >  7:194365/1‑135 (MQ=255)
                                                                                                                    gCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGc                                           <  8:194365/135‑1 (MQ=255)
                                                                                                                    gCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGc                              >  8:19610/1‑148 (MQ=255)
                                                                                                                                ggCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAg                  <  5:226467/148‑1 (MQ=255)
                                                                                                                                 gCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGt                >  7:79024/1‑149 (MQ=255)
                                                                                                                                 gCCGCAAAGAGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGt                >  2:74455/1‑149 (MQ=255)
                                                                                                                                       aaGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGt          <  2:315432/149‑1 (MQ=255)
                                                                                                                                       aaGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGt          <  8:186222/149‑1 (MQ=255)
                                                                                                                                        aGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGt          <  1:74455/149‑1 (MQ=255)
                                                                                                                                             ccccAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCTAGGTGCCGGTGAacac    >  7:98532‑M2/5‑149 (MQ=255)
                                                                                                                                               ccAACTATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGTGAACAcgc  <  5:319883‑M2/147‑1 (MQ=255)
                                                                                                                                               ccAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGTGAACAcgc  >  1:254909‑M2/3‑149 (MQ=255)
                                                                                                                                               ccAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGTGAACAcgc  <  8:79024‑M2/147‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
ATGATCGAGAGCGGTTGGCGGGCAAAGGGATTTGGCAGGCTTGAGAAAGCCGGGGCTGCTTTGCAGCCCATCGCAACACAAGGCCGCTCTTACAAGGACCTTGCAATGCCTGGGGCATATGCGATGGGCCGCAAAGCGGCCCCAACGATTTCAGCTGTTCTGCGAACCTTCGAACCAGGCCAGCTTGTCACGCAACTGCACCACTTCCCCCACAATCACCAGGGTCGGCGCATGCACCTCATGCTGGGCCACCAGGTCTGGCAAGTCCGCCAAGGTGCCGGTGAACACGC  >  NC_002947/4507239‑4507528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.