| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4889569 = | 48 (0.970) | 5 (0.130) | 5/202 | NT | 14.7% | intergenic (+15/‑138) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | 4889660 = | 20 (0.510) | intergenic (+106/‑47) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
GAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGA > NC_002947/4889513‑4889807 | gacgCGGGCCGGGGCTGGCTCAAAACCCACAACGCAATCTCCGCAACACCTCGGCACCCTGTGGCTGCGGGCTCGCCCGCGAACACCGCCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAggggg < 2:73744/146‑1 (MQ=25) aaGCGGGCCGGGGCGGGCTGAAAACCCACAACCCAAGCTCACGAACACCTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAACGCCGCTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGc < 3:185433/149‑1 (MQ=25) ggctggctGAAAACCCACATCGCTATCTGAGTAACAACTGGGTACCGTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCGGGTGCCTTCGACCGTGTTGTCTGCTTCGGGGGCTAGCCCGCTCCCACAGGGGGCCAAAgctttc < 4:241736/148‑3 (MQ=25) ggctggctGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTACCCCGCCAACACCCGCAAAGCCCCTGGCATACACCCAGTTCTAAGCATAGCGGGCGACACCGCTCCCAAAAGCGGCCCAAacatgca > 8:139855/1‑148 (MQ=255) gctggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGCACCCTGTGCGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgcttgctt < 5:91218/149‑1 (MQ=255) gctgAAAACCCACAACCCAATCTGAGGAACAACGCGGGACCCTGGGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCCCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag < 6:170255/148‑1 (MQ=255) ctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag > 7:141517/1‑147 (MQ=255) ctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag < 8:141517/147‑1 (MQ=255) tctcAGCAACAACTCGGGACCGTGTGGGAGCGGGCGCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag < 6:256736/128‑1 (MQ=255) tCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag > 5:256736/1‑128 (MQ=255) gAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCaaa > 7:223103/1‑114 (MQ=255) gAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCaaa < 8:223103/114‑1 (MQ=255) caCCCTGTGGTTGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCCCCGAGTTGTCTGCTTCGCGGCCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTaaa < 1:258044/148‑1 (MQ=255) GGGAGCGGGCTCGCCCGCGAACACCGGCAAACCCGGTGCCATCCACCGAGTTGTATGCTTCCCGCGCGAGCCAGCTCCCACAGGGGGCCAAAGCTTGCTTGAGCTATCACAATTACAAAGAGGTAATTTATCATGGAAAAAATAGgta < 6:12002‑M1/148‑2 (MQ=255) gtAGCGGCCGCGCCCGCTAACACCGGAAACCCGGGTGCCATCCCCGGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTc > 4:181720‑M1/3‑149 (MQ=255) GCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGATTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc > 5:19219‑M1/1‑149 (MQ=255) GCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc < 7:144926‑M1/149‑1 (MQ=255) ctcgcccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCg < 7:145286‑M2/60‑1 (MQ=255) ctcgcccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCg > 8:145286‑M2/77‑136 (MQ=255) GCCCGCTAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCg > 6:279708‑M1/1‑148 (MQ=255) ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGACGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca > 5:274192‑M2/72‑149 (MQ=255) cgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggTGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat > 7:262603‑M2/71‑149 (MQ=255) actggaaaaGCCGTTGCCATCAACCTATTTGTCTGATTCTCGGGAGTGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGc < 7:139855/143‑1 (MQ=255) cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGc > 7:136568/1‑147 (MQ=255) ggCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAg > 5:213802/1‑149 (MQ=255) ggCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAg > 6:306743/1‑149 (MQ=255) ggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggTGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCAt < 8:262603‑M2/94‑1 (MQ=255) ggTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCt < 8:136568/149‑1 (MQ=255) cATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa > 7:15089/1‑149 (MQ=255) aTCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAc > 7:165506/1‑149 (MQ=255) aGTTTTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCTTGccc < 1:31739/129‑1 (MQ=255) aGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGTGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCTTGccc > 2:31739/1‑129 (MQ=255) tCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg < 8:165506/149‑1 (MQ=255) gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCt > 2:198461/1‑127 (MQ=255) gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGt > 1:15099/1‑148 (MQ=255) cgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTcaca < 3:132347‑M2/123‑1 (MQ=255) gggggcgagcccgctcccacagggGGCCAAAGCTTTCTTGAGATATCACTATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGTCACCGGCATCATGGGCAATCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAg < 5:12002‑M2/124‑1 (MQ=255) cgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGcc > 5:101651‑M2/24‑149 (MQ=255) gagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGtt > 2:134880‑M2/19‑148 (MQ=255) gcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCAt < 6:101651‑M2/133‑1 (MQ=255) gcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCAAAATTACAAAGAGGTAATTTCTCATGCCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACCGCCTGTTCAt > 1:193413‑M2/17‑149 (MQ=255) tcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTccac > 4:149781‑M2/11‑149 (MQ=255) cccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGc < 7:27747‑M2/86‑1 (MQ=255) cccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGc > 8:27747‑M2/10‑95 (MQ=255) acagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGGCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTccacccac > 1:259144‑M2/7‑149 (MQ=255) cagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCCCAGCCTGTTCATTTccacccac > 7:76426‑M2/6‑148 (MQ=255) gggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGATGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCcaccac < 8:15089‑M2/146‑1 (MQ=255) gGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGa < 1:134880‑M2/148‑1 (MQ=255) | GAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCACGA > NC_002947/4889513‑4889807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |