New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4891009 =	54 (1.090)	3 (0.060)	3/242	NT	5.9%	coding (171/1275 nt)	ttuD	hydroxypyruvate reductase
	?	NC_002947	4891070 =	44 (0.940)					coding (232/1275 nt)	ttuD	hydroxypyruvate reductase

TACCTGCCCGCCGATCGCAGCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTGGCGGTGGCTCGGCGTTGCTGGC  >  NC_002947/4890923‑4891215                                                                                                                                                    |                                                                                                                                                  ttgctgaccagttccagcacgcgcttggccacagccaggccggcagcgtccgggaccgggtgggcggcttcgaccacctcgatcttCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCagaa                                                                                                                                                  >  5:173768‑M1/87‑149 (MQ=255)   ccTGCCCGCCGATCGCAGCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCagaa                                                                                                                                                  <  6:243025/147‑1 (MQ=255)    ctgaccagttccagcacgcgcttggccacagccaggccggcagcgtccgggaccgggtgggcggcttcgaccacctcgatcttCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCagaaga                                                                                                                                                >  7:27410‑M1/84‑148 (MQ=255)      gCCCGCCGATCGCAGCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATc                                                                                                                                              >  8:298325/1‑148 (MQ=255)      gCCCGCCGATCGCAGCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATc                                                                                                                                              >  3:290205/1‑148 (MQ=255)                 gCAGCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGaa                                                                                                                                  <  4:290205/149‑1 (MQ=255)                    gCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAgcc                                                                                                                               <  8:54898/149‑1 (MQ=255)                             ttATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCg                                                                                                                      >  2:209125/1‑149 (MQ=255)                              tATCGTCATCGGCGCCTGCAAGGCCGCAGCTGCCATGGCCGAAGTTGTCTAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCGACGGCGCCAACTGCCAGAAGATGGAGTTGGTCTAAGCCGCCCAacct                                                                                                                      <  2:301426/148‑2 (MQ=255)                                tCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTc                                                                                                                   <  1:209125/149‑1 (MQ=255)                                tCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTc                                                                                                                   >  5:277353/1‑149 (MQ=255)                                   tCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCg                                                                                                                >  7:61011/1‑149 (MQ=255)                                   gcATCGGCGCCGGCAAGGCCGCATCTGCCATGGCCGAAGATGTCGAGAAAATCTGGGATGGTTCATGCTCCGGCCTTGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCg                                                                                                                <  2:102829/148‑1 (MQ=255)                                              ggCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCgg                                                                                                     <  6:69288/149‑1 (MQ=255)                                                 aaGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCt                                                                                                  >  3:12307/1‑149 (MQ=255)                                                  aGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTg                                                                                                 <  6:211527/149‑1 (MQ=255)                                                    gCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGc                                                                                               <  7:155802/149‑1 (MQ=255)                                                       gCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCtgt                                                                                            <  4:235363/149‑1 (MQ=255)                                                       gCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCtgt                                                                                            >  2:314686/1‑149 (MQ=255)                                                           cTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCt                                                                                                  <  8:13542/139‑1 (MQ=255)                                                           cTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCt                                                                                                  >  7:13542/1‑139 (MQ=255)                                                                    ccGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTg                                                                               >  6:219892/1‑149 (MQ=255)                                                                    ccGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTg                                                                               >  5:320910/1‑149 (MQ=255)                                                                     cGAAGTGGTCGAGAAAAGCTGGCAGTGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGc                                                                              <  2:112170/149‑1 (MQ=255)                                                                     cGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGc                                                                              >  6:216209/1‑149 (MQ=255)                                                                           ggTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAAc                                                                        >  3:6548/1‑149 (MQ=255)                                                                            gTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCtgtg                                                                                           <  7:137936/129‑1 (MQ=255)                                                                            gTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCtgtg                                                                                           >  8:137936/1‑129 (MQ=255)                                                                            gTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACt                                                                       >  6:115079/1‑149 (MQ=255)                                                                             tCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTg                                                                      <  6:277353/149‑1 (MQ=255)                                                                               gagaAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGt                                                                    <  2:38408/149‑1 (MQ=255)                                                                                 gaAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGt                                                                    >  8:97338/1‑147 (MQ=255)                                                                                 gaAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCa                                                                  <  5:219892/149‑1 (MQ=255)                                                                                 gaAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCa                                                                  <  8:61011/149‑1 (MQ=255)                                                                                 gaAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCa                                                                  <  7:298325/149‑1 (MQ=255)                                                                                   tcttctggcagttggcgccgtggccgtaacgggtcacgaccaggccggagacttcaccctgccagAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAg                                                                 >  7:27410‑M2/66‑148 (MQ=255)                                                                                    aaGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCa                                                               <  3:151244/149‑1 (MQ=255)                                                                                     ttctggcagttggcgccgtggccgtaacgggtcacgaccaggccggagacttcaccctgccagAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCaa                                                              >  5:173768‑M2/64‑149 (MQ=255)                                                                                      gCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAAc                                                             <  2:236709/149‑1 (MQ=255)                                                                                                tGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACgaag                                                   <  5:281184/149‑1 (MQ=255)                                                                                                         cGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGTAACTGGTCAGCAACCTCAACGAAGAAGACcgcg                                          >  4:55621/1‑149 (MQ=255)                                                                                                         cGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACcgc                                           <  6:320910/148‑1 (MQ=255)                                                                                                          ggCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGt                                         <  4:6548/149‑1 (MQ=255)                                                                                                           cgtaacgggtcacgaccaggccggagacttcaccctgccagAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTc                                        <  8:27410‑M2/108‑1 (MQ=255)                                                                                                                 tCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTc                                  <  5:216209/149‑1 (MQ=255)                                                                                                                        ccGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCa                                                                  >  4:45767/1‑110 (MQ=255)                                                                                                                        ccGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCa                                                                  <  3:45767/110‑1 (MQ=255)                                                                                                                          gTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCt                         >  3:92550/1‑149 (MQ=255)                                                                                                                             aCGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTgg                       <  4:92550/148‑1 (MQ=255)                                                                                                                                  cACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTGGCGGTgg                 >  6:231689/1‑149 (MQ=255)                                                                                                                                           aaCTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTGGCGGTGGCTCGGCGtt        <  4:12307/149‑1 (MQ=255)                                                                                                                                                ccagAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTGGCGGTGgctcggcgaacaaag   >  1:113467‑M2/5‑142 (MQ=255)                                                                                                                                                ccagAAGATCGAGGTGGTCGAAGCCGCCCAACCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCACCCTCAACGAAGCAGACCGCGTCATCTTCCTGCTGTCTGGCGGTGGCtaggcgtgtctgt   >  7:294676‑M2/5‑143 (MQ=255)                                                                                                                                                 cagAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTGGCGGTGGCTCGGCGTTGCTGGc  >  3:170279‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TACCTGCCCGCCGATCGCAGCGGCCGGGTTATCGTCATCGGCGCCGGCAAGGCCGCAGCTGCCATGGCCGAAGTGGTCGAGAAAAGCTGGCAGGGTGAAGTCTCCGGCCTGGTCGTGACCCGTTACGGCCACGGCGCCAACTGCCAGAAGATCGAGGTGGTCGAAGCCGCCCACCCGGTCCCGGACGCTGCCGGCCTGGCTGTGGCCAAGCGCGTGCTGGAACTGGTCAGCAACCTCAACGAAGAAGACCGCGTCATCTTCCTGCTGTCTGGCGGTGGCTCGGCGTTGCTGGC  >  NC_002947/4890923‑4891215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.