New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 523132843 (0.870)4 (0.090) 4/242 NT 8.2% coding (1368/1578 nt) PP_4610 PepSY‑associated TM helix domain‑containing protein
?NC_002947 = 5231362 49 (1.050)coding (1334/1578 nt) PP_4610 PepSY‑associated TM helix domain‑containing protein

CAGAAACAGGCCGGTCCCCAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAGAAGAAGCT  >  NC_002947/5231220‑5231504
                                                                                                                                              |                                                                                                                                              
cAGAAACAGGCCGGTCCCCAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAgttgct                                                                                                                                          <  8:37004‑M2/149‑7 (MQ=255)
   aaaCAGGCCGGTCCCCAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGc                                                                                                                                       <  4:57517/149‑1 (MQ=255)
             gTCCCCAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCtt                                                                                                                             <  7:37004/149‑1 (MQ=255)
                cccAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTgcg                                                                                                                          >  5:89200/1‑149 (MQ=255)
                 ccAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTgcgc                                                                                                                         >  3:189875/1‑149 (MQ=255)
                            aGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACgcag                                                                                                              >  5:94530/1‑149 (MQ=255)
                                   aGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCg                                                                                                       <  3:171629/149‑1 (MQ=255)
                                    gCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGt                                                                                                      <  4:142903/149‑1 (MQ=255)
                                       ggCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCa                                                                                                   >  2:6975/1‑149 (MQ=255)
                                         ccATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGATGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCAc                                                                                                  >  4:64911/1‑148 (MQ=255)
                                             ggCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAg                                                                                                                                               >  6:47865‑M2/1‑98 (MQ=255)
                                             ggCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAg                                                                                                                                               <  5:47865‑M2/99‑2 (MQ=255)
                                                 cAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAg                                                                                         <  6:94530/149‑1 (MQ=255)
                                                        ccTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAg                                                                                  >  3:174277/1‑149 (MQ=255)
                                                              gTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGAt                                                                             >  6:235786/1‑148 (MQ=255)
                                                                 ccGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAg                                                                                                                                  >  6:219120/1‑92 (MQ=255)
                                                                 ccGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAg                                                                                                                                  <  5:219120/92‑1 (MQ=255)
                                                                 ccGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCAc                                                                                                  <  5:262773/124‑1 (MQ=255)
                                                                 ccGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCAc                                                                                                  >  6:262773/1‑124 (MQ=255)
                                                                  cGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCa                                                                                                >  6:259888/1‑125 (MQ=255)
                                                                  cGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCa                                                                                                <  5:259888/125‑1 (MQ=255)
                                                                  cGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATgaaga                                                                        <  5:124210/149‑1 (MQ=255)
                                                                  cGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATgaag                                                                         >  2:247933/1‑148 (MQ=255)
                                                                   gAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATgaagaa                                                                       <  5:235786/149‑1 (MQ=255)
                                                                        gTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCa                                                                   <  4:189875/148‑1 (MQ=255)
                                                                          tCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGc                                                                                              <  8:165414/119‑1 (MQ=255)
                                                                          tCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGc                                                                                              >  7:165414/1‑119 (MQ=255)
                                                                                cccGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTcc                                                          >  2:261996/1‑149 (MQ=255)
                                                                                cccGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTcc                                                          <  1:261996/149‑1 (MQ=255)
                                                                                 ccGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGAGCACCAGCGACAGGCCCCACGCGATGAAGAAACCATTGACCTcc                                                          >  4:254900/1‑148 (MQ=255)
                                                                                  cGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCa                                                        <  6:89200/149‑1 (MQ=255)
                                                                                           gtcAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGcgcg                                               <  4:174277/149‑1 (MQ=255)
                                                                                            tcAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCgg                                              <  1:247933/149‑1 (MQ=255)
                                                                                               ggCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCt                                           >  3:188650/1‑149 (MQ=255)
                                                                                                  cATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTc                                         >  6:161984/1‑148 (MQ=255)
                                                                                                   aTTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAgttgctcaatggcctgacgactgaccggggcttgaaccattcggtactggagggcgactgggccatggccggcttcgatctga                                                             <  5:230211‑M2/127‑84 (MQ=255)
                                                                                                   aTTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAgttgctcaatggcctgacgactgaccggggcttgaaccattcggtactggagggcgactgggccatggccggcttcgatctga                                                             >  6:230211‑M2/1‑44 (MQ=255)
                                                                                                   aTTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCa                                                                   >  2:96109/1‑121 (MQ=255)
                                                                                                   aTTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCa                                                                   <  1:96109/121‑1 (MQ=255)
                                                                                                    ttGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAgttgctcaatggcctgacgactgaccggggcttgaaacattcggtactggagggcgactgggccatggccggcttcgatctgacagccctggggaccggcctgttt                                      <  1:190443‑M2/149‑107 (MQ=255)
                                                                                                     tGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGa                                       >  6:107020/1‑147 (MQ=255)
                                                                                                      gAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACa                                     <  5:107020/148‑1 (MQ=255)
                                                                                                        gCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGc                                   >  4:278669/1‑148 (MQ=255)
                                                                                                                 gcagcGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCAcc                         <  4:188650/149‑1 (MQ=255)
                                                                                                                           ggCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTgg               <  3:254900/149‑1 (MQ=255)
                                                                                                                            gCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGc              >  8:169403/1‑149 (MQ=255)
                                                                                                                              cAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATggg                             >  6:121800/1‑132 (MQ=255)
                                                                                                                              cAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATggg                             <  5:121800/132‑1 (MQ=255)
                                                                                                                               aGCGCCCCCAGCGCCAgtttctcaatggcctgaagactgaccggggctttaaccattcggtaatgtagggcgactgggccatggccggcttcgatctgaaagccctggtgaccggcctttttctggcctggctggctcgcaagatgctg           >  2:190443‑M2/1‑16 (MQ=255)
                                                                                                                                    ccccAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCagaag       >  4:61412/1‑148 (MQ=255)
                                                                                                                                    ccccAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCagaag       >  4:258595/1‑148 (MQ=255)
                                                                                                                                     cccAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCagaag       >  5:151117/1‑147 (MQ=255)
                                                                                                                                     cccAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAgaagaa     <  1:6975/149‑1 (MQ=255)
                                                                                                                                       cAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCag          <  7:284428/142‑1 (MQ=255)
                                                                                                                                       cAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTAGACAGCCATGGGCACCAGGCGGTTGGCCCag          >  8:284428/1‑142 (MQ=255)
                                                                                                                                        aGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAGAAGAAGCt  <  3:258595/149‑1 (MQ=255)
                                                                                                                                        aGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAGAAGAAGCt  >  4:98556/1‑149 (MQ=255)
                                                                                                                                             cAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAgaagaa     <  7:269837/141‑1 (MQ=255)
                                                                                                                                             cAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAgaagaa     >  8:269837/1‑141 (MQ=255)
                                                                                                                                              |                                                                                                                                              
CAGAAACAGGCCGGTCCCCAGGGCTGTCAGATCGAAGCCGGCCATGGCCCAGTCGCCCTCCAGTACCGAATGGTTCAAGCCCCGGTCAGTCGTCAGGCCATTGAGCAACGGCAGCAGCGCGAAGGCCAGCGCCCCCAGCGCCAGTTGCTCGCCCCAGGCCTTGCGCCCGCTACGCAGCACGGCGTGCACCAGCGACAGGCCCCAGGCGATGAAGAAAGCATTGACCTCCCAGTCGGCGCGGCCTTCGACAGCCATGGGCACCAGGCGGTTGGCCCAGAAGAAGCT  >  NC_002947/5231220‑5231504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.