New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5649805 =	48 (0.970)	3 (0.060)	3/242	NT	6.9%	coding (1388/2127 nt)	PP_4959	diguanylate cyclase
	?	NC_002947	5649839 =	35 (0.750)					coding (1354/2127 nt)	PP_4959	diguanylate cyclase

CCGGCGGCACATCGCCAACGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTGGCAATGCC  >  NC_002947/5649692‑5649986                                                                                                                                                       |                                                                                                                                                    ccGGCGGCACATCGCCAACGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATc                                                                                                                                                    <  8:76991/149‑1 (MQ=255)     ctgcACATCGCCAACGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATc                                                                                                                                                <  8:211042/147‑1 (MQ=255)         acaTCGCCAACGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGAAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGAGCA‑CGC‑TGTCC‑TCGAGCATCAATcgc                                                                                                                                              >  5:319208/1‑147 (MQ=255)              ctgcgttcggccgatgcagcaatgtacgcagccaagcaagcggggcgtcagcaataccgcttctacgaccaggaactcaacggacgggcgcgctcgcgattgatgctcgatggccatgcgcacgctgtcctcgagcaTCAATCGCGAg                                                                                                                                           <  5:196054‑M2/11‑1 (MQ=255)                cAACGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGcc                                                                                                                                     >  5:289085/1‑149 (MQ=255)                 aaCGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGccc                                                                                                                                    >  2:282089/1‑149 (MQ=255)                      tGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACTCAGGCGGCCATCGGGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGAGCA‑CGC‑TGTCC‑TCGAGCATCAAGCGCGAGCGAGCtcggaag                                                                                                                               >  6:281700/1‑145 (MQ=255)                       gatgcagcaatgtacgcagccaagcaagcggggcgtcagcaataccgcttctacgaccaggaactcaacggacgggcgcgctcgcgattgaTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCAt                                                                                                                                                     <  3:210757‑M1/35‑1 (MQ=255)                       gatgcagcaatgtacgcagccaagcaagcggggcgtcagcaataccgcttctacgaccaggaactcaacggacgggcgcgctcgcgattgaTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCAt                                                                                                                                                     >  4:210757‑M1/92‑126 (MQ=255)                          gTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCACGCCCGTCCGTTGa                                                                                                                           <  5:235603/149‑1 (MQ=255)                              tgcCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CTC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTc                                                                                                                       <  3:166990/149‑1 (MQ=255)                              tgcCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGtt                                                                                                                             <  7:114339/143‑1 (MQ=255)                              tgcCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGtt                                                                                                                             >  8:114339/1‑143 (MQ=255)                               gcCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑AGTCC‑TCGAGCATCAATCGCGAGCGCCCCCGTCCGTTGAGTTc                                                                                                                       >  4:194125/1‑148 (MQ=255)                                ccAGCGCAGCAAGGCCTCGAAACCACGCAGGCCGCCAGCGTGGAAGGCGACCTGTGGCGGGTACACCAAGGTAAAGTCCTGCTGCGCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCt                                                                                                                     <  2:204273/149‑1 (MQ=255)                                    cgcAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTc                                                                                                                 <  3:66789/149‑1 (MQ=255)                                           aGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAg                                                                                                          >  2:250508/1‑149 (MQ=255)                                                  gAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTAtt                                                                                                   >  2:28142/1‑149 (MQ=255)                                                    aaCCACGCCGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGc                                                                                                 <  2:235082/149‑1 (MQ=255)                                                     aCCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCt                                                                                                <  6:284880/149‑1 (MQ=255)                                                       cACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGc                                                                                                 >  2:90165/1‑146 (MQ=255)                                                       cACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGc                                                                                                 <  1:90165/146‑1 (MQ=255)                                                                     tCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCgcttgctt                                                                                >  6:146524/1‑149 (MQ=255)                                                                       gTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTgg                                                                              >  4:304853/1‑149 (MQ=255)                                                                               cGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTAc                                                                      <  1:282089/149‑1 (MQ=255)                                                                                     gtgGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAg                                                                                                             <  1:21345/104‑1 (MQ=255)                                                                                     gtgGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAg                                                                                                             >  2:21345/1‑104 (MQ=255)                                                                                      tgGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATtgct                                                                <  8:96106/148‑1 (MQ=255)                                                                                         cTGGTACACCAAGGTACAGTCCTGGTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGGATCAATCGCGTGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGATCCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCAt                                                            <  6:319208/149‑1 (MQ=255)                                                                                             tACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGc                                                                                                 >  8:159563/1‑108 (MQ=255)                                                                                             tACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGc                                                                                                 <  7:159563/108‑1 (MQ=255)                                                                                             tACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGc                                                        <  6:126475/149‑1 (MQ=255)                                                                                                  cAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCAGCGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGaa                                                    >  1:46990/1‑149 (MQ=255)                                                                                                  cAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAAc                                                   <  1:250508/149‑1 (MQ=255)                                                                                                     ggTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTgg                                                                              >  1:272057/1‑119 (MQ=255)                                                                                                     ggTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTgg                                                                              <  2:272057/119‑1 (MQ=255)                                                                                                       ctcgcgattgaTGCTCGA‑GGACA‑GCGTG‑CGCATGGCCATCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACgcag                                               <  5:196054‑M1/137‑1 (MQ=255)                                                                                                         aaGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGcagcag                                            <  3:194125/149‑1 (MQ=255)                                                                                                                    atgctcgaggacagcgtgcgcatggccatcgagcaTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATc                                                           <  3:210757‑M2/91‑1 (MQ=255)                                                                                                                    atgctcgaggacagcgtgcgcatggccatcgagcaTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATc                                                           >  4:210757‑M2/36‑126 (MQ=255)                                                                                                                    CTCGATGGCCATGCGCA‑TGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGCCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACAt                                 <  6:143768‑M1/149‑1 (MQ=255)                                                                                                                     TCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACAtt                                <  5:321189‑M1/149‑1 (MQ=255)                                                                                                                       GATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTgg                              <  2:182223‑M1/149‑1 (MQ=255)                                                                                                                              aTGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCcaca                       <  2:46990/149‑1 (MQ=255)                                                                                                                                      cGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCggg                <  6:321189/149‑1 (MQ=255)                                                                                                                                          tGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAg             >  6:292537/1‑149 (MQ=255)                                                                                                                                              c‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTg          <  5:146524/148‑1 (MQ=255)                                                                                                                                                tcgagcaTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTgg         >  6:54124‑M2/8‑148 (MQ=255)                                                                                                                                                tcgagcaTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTgg         >  4:108423‑M2/8‑148 (MQ=255)                                                                                                                                                  gagcaTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTGGCaa      <  6:289085‑M2/144‑1 (MQ=255)                                                                                                                                                    gcaTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTGGCAATg    <  1:182223‑M2/146‑1 (MQ=255)                                                                                                                                                      aTCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTGGCAATGcc  <  5:292537‑M2/148‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    CCGGCGGCACATCGCCAACGCTGGGGTGCTGCCAGCGCAGCAAGGCCTCGAAACCACGCAGGCGGCCATCGTGGAAGGCGACCTGTGGCTGGTACACCAAGGTAAAGTCCTGCTGCTCGATGGCCATGCGCA‑CGC‑TGTCC‑TCGAGCATCAATCGCGAGCGCGCCCGTCCGTTGAGTTCCTGGTCGTAGAAGCGGTATTGCTGACGCCCCGCTTGCTTGGCTGCGTACATTGCTGCATCGGCCGAACGCAGCAGGCCTTCGACATTGGCGCCACAGTCCGGGTAGGTGGCAATGCC  >  NC_002947/5649692‑5649986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.