New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6078715	55 (1.110)	3 (0.060)	3/242	NT	5.7%	coding (511/1290 nt)	PP_5330	MFS transporter
	?	NC_002947	= 6078761	47 (1.010)					coding (465/1290 nt)	PP_5330	MFS transporter

CGCCAAGCAGGAACGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCATACGTCGGCAGCAGGCCCATGATCAGG  >  NC_002947/6078613‑6078905                                                                                                                                                     |                                                                                                                                                 cGCCAAGCAGGAACGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGa                                                                                                                                                  <  3:47042/149‑1 (MQ=255)         aGGAACGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCAc                                                                                                                                          <  4:225641/149‑1 (MQ=255)            aaCGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACgtg                                                                                                                                       <  1:110768/149‑1 (MQ=255)              cGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGtt                                                                                                                                     <  7:119819/149‑1 (MQ=255)              cGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGtt                                                                                                                                     >  1:296452/1‑149 (MQ=255)              cGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGCCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGtt                                                                                                                                     <  8:90050/149‑1 (MQ=255)                ggATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCa                                                                                                                                   <  3:168737/149‑1 (MQ=255)                  aTTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCaga                                                                                                                                 <  2:296452/149‑1 (MQ=255)                   ttCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCagag                                                                                                                                <  5:37301/149‑1 (MQ=255)                      gCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAgccgg                                                                                                                                             >  4:263158‑M2/1‑128 (MQ=255)                      gCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAgccgg                                                                                                                                             <  3:263158‑M2/133‑6 (MQ=255)                          ggCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCGGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAaca                                                                                                                         >  3:86507/1‑149 (MQ=255)                                gTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCAt                                                                                                                    <  6:206123/148‑1 (MQ=255)                                gTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCAt                                                                                                                    <  2:170922/148‑1 (MQ=255)                                 tCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATgc                                                                                                                  >  1:243324/1‑149 (MQ=255)                                     ccACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGccc                                                                                                              <  4:221380/149‑1 (MQ=255)                                      cACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCg                                                                                                             >  3:228732/1‑149 (MQ=255)                                                gcgcTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTcgcc                                                                                                   >  8:291586/1‑149 (MQ=255)                                                 cgcTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTcgccg                                                                                                  >  3:245787/1‑149 (MQ=255)                                                   cTGTACACGCTGTTGATCAAGGTCTCTACCAGCGAGCCCATCAGAATGCCGGCGGTCAGGCCGGAGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGAACTTc                                                                                                      <  3:242699/143‑1 (MQ=255)                                                   cTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTCTTCAGAGACGAACACCCATCCGCCCGGTACTTcgagat                                                                                                 >  4:242699/1‑144 (MQ=255)                                                      tACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGa                                                                                              <  2:76315/148‑1 (MQ=255)                                                           gCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCcg                                                                                        >  8:222319/1‑149 (MQ=255)                                                           gCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCcg                                                                                        >  7:257966/1‑149 (MQ=255)                                                                  aTCAAGGTCGCTACCAGCGAGCCCAGCGGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTg                                                                                 <  4:86507/149‑1 (MQ=255)                                                                  aTCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTg                                                                                 >  2:292002/1‑149 (MQ=255)                                                                     aaGGTCGCTACCAGCGAGCCGAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGAt                                                                              >  7:66793/1‑149 (MQ=255)                                                                      aGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGAt                                                                              <  1:251178/148‑1 (MQ=255)                                                                      aGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGAt                                                                              >  2:251178/1‑148 (MQ=255)                                                                           gCTACCAGCGAGCCTAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCAcgc                                                                         <  8:66793/148‑1 (MQ=255)                                                                             tACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACgcgc                                                                       >  1:111712/1‑148 (MQ=255)                                                                               ccAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCa                                                                      <  8:257966/147‑1 (MQ=255)                                                                                cAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCa                                                                   <  2:111712/149‑1 (MQ=255)                                                                                       cccAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGCCGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAAcag                                                            >  7:22872/1‑149 (MQ=255)                                                                                             agAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGAt                                                      >  7:288854/1‑149 (MQ=255)                                                                                               aaTGCCGGCGGTCAGGCCGGCGGTCTGGGTGCCGCAGGCATAGCCGGTGTTGCGAgccggaattctgctggtctcgctggtagcgaccttgatcaacagcgagtacagcgaggaagaagtggctgagtacgcctggcgaaacccgttcc                                                    <  3:167883‑M2/149‑95 (MQ=255)                                                                                                   ccggcggtcaggccggcggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAgccggcattctgctgggctcgctggtagcgaccttgatcaacagcgtgtacagcgcggaagaagtggctgactacgcctggcgaatcccgttcctgct                                                <  2:149772‑M2/149‑99 (MQ=255)                                                                                                     ggcggtcaggccggcggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGccc                                              <  4:245787/149‑1 (MQ=255)                                                                                                      gcggtcaggccggcggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCca                                             >  2:111609/1‑149 (MQ=255)                                                                                                         gtcaggccggcggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACAt                                          <  7:291586/149‑1 (MQ=255)                                                                                                            aggccggcggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAgccggcattctgctgggctcgctggtagcgaccttgatcaacagcgtgtacagcgcggaagaagtggctgactacgcctggcgaatcccgttcctgcttggcggtgt                                       >  1:149772‑M2/1‑42 (MQ=255)                                                                                                             tgccggcggtcaggGTGCCGCAGGCATAGCAGGTGTTTCGAGCCGGCACGTTTTCAGAGACTAACACCCATGCGCCCGGTACTTCGACGCATATTGCCGAGCCTTTGATCACGCGCATCa                                                                   <  6:320464/119‑1 (MQ=255)                                                                                                             ggccggcggtcaggGTGCCGAAGGCATAGCCGGTGTTGAGATACGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGACGCGCCTTGGATCACGCGCATCa                                                                   >  5:320464/1‑120 (MQ=255)                                                                                                                   cggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTgc                                <  1:111609/149‑1 (MQ=255)                                                                                                                   cggtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTgc                                <  2:243324/149‑1 (MQ=255)                                                                                                                     gtcaggGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTgcgc                              <  1:292002/149‑1 (MQ=255)                                                                                                                          ggTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCAt                            >  4:49105/1‑146 (MQ=255)                                                                                                                          ggTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCAt                            <  3:49105/146‑1 (MQ=255)                                                                                                                                    gCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAAcagca                                                          >  4:212268/1‑106 (MQ=255)                                                                                                                                    gCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAAcagca                                                          <  3:212268/106‑1 (MQ=255)                                                                                                                                    gCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCATACGTCGGcagcag               >  7:122968/1‑149 (MQ=255)                                                                                                                                          ccGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCATACGTCGGCAGCAGGCCCAt         <  7:222319/149‑1 (MQ=255)                                                                                                                                            ggTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTACCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCATACGTCGGCAGCAGGCCCATGa       >  2:306301/1‑149 (MQ=255)                                                                                                                                             gtgtTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCt                                  >  2:71871/1‑121 (MQ=255)                                                                                                                                             gtgtTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCt                                  <  1:71871/121‑1 (MQ=255)                                                                                                                                                gcgccaGCCGGCCCGCGTGCAGAGACGACCACCCCTCCGCCCCGCACTTCGCCGCCGATTGCCGCGCCTTCGATCACGCGCATCAGCAACCGCAGGATCGGTGCCCACATCCCGATCTGCGCATACGGCGGCAGCAGGCCCATGATCAg   <  8:288854/144‑1 (MQ=255)                                                                                                                                                 tGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCGCACATGCCGATCTGCGCATACGTCGGCAGCAGGCCCATGATCAgg  >  5:43182/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGCCAAGCAGGAACGGGATTCGCCAGGCGTAGTCAGCCACTTCTTCCGCGCTGTACACGCTGTTGATCAAGGTCGCTACCAGCGAGCCCAGCAGAATGCCGGCGGTCAGGCCGGCGGTCAGGGTGCCGCAGGCATAGCCGGTGTTGCGAGCCGGCACGTGTTCAGAGACGAACACCCATGCGCCCGGTACTTCGCCGCCGATTGCCGCGCCTTGGATCACGCGCATCAGCAACAGCAGGATCGGTGCCCACATGCCGATCTGCGCATACGTCGGCAGCAGGCCCATGATCAGG  >  NC_002947/6078613‑6078905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.