| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 6,056,675 | (GCACCG)2→1 | coding (802‑807/927 nt) | oxyR → | oxidative and nitrosative stress transcriptional dual regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6056667 | 6056672 | 6 | 42 [0] | [0] 42 | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6056673 = | 0 (0.000) | 40 (1.210) | 32/274 | 0.2 | 100% | coding (800/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | = 6056666 | 0 (0.000) | coding (793/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
GGGACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056826‑6056673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgccgTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTGGTGTGCCTTGAGCCTT < NC_002947/6056666‑6056520 GGGACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACG > 8:172002/1‑148GGGACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACG < 3:57439/148‑1GGGACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACG < 6:23894/148‑1GGGACCTGCGACAGCTCACTCAGGACACAGGCCGGTTGTTCCGCCGGGTGTTTGGCGACCGAGCACAGGCGGAGCGAATCGGCGAGGAGCTCGCTGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACG < 3:153141/148‑1 CCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGC < 2:27985/148‑1 TCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCAC > 5:148400/1‑148 TCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCAC > 8:160274/1‑148 CTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGAT < 1:41470/148‑1 CTCAGGCCGGTTGTGCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGA < 3:145837/147‑1 TCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATG < 5:127168/148‑1 TCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATG > 3:69842/1‑148 AGGCCGGTTGTTCCGCAGGG‑TTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACG > 8:137763/1‑148 GTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGG > 2:74425/1‑148 GTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCA > 2:56406/1‑123 TTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAA < 1:56406/123‑1 CGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAG > 3:64753/1‑148 CGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATA < 5:24229/147‑1 GGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGT < 4:113032/148‑1 CGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCAC > 8:87565/1‑148 ACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAG < 3:48690/148‑1 GCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCG > 1:90725/1‑112 CGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGG < 2:90725/112‑1 TCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGG > 1:144373/1‑142 AATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCG > 2:178395/1‑147 AATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCG > 1:75388/1‑147 CGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATAC < 7:153299/148‑1 AGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAA > 1:143314/1‑148 AGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAA < 7:172002/148‑1 AGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAA > 1:146069/1‑148 ATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGC < 4:64753/148‑1 GATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCA > 8:52108/1‑110 ATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAA < 4:69842/147‑1 ATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAA < 4:132577/147‑1 ATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCAC < 7:52108/110‑1 CCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGGGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGA < 2:144638/148‑1 AGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGT < 2:75388/148‑1 ccGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTT > 8:92539/3‑148 TGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTT > 2:22194/1‑147 CGCGCCAGGGGATGGCTACCCTGCGGAACGGTGCCGTCTACGGGGGCACTTCGATGCCGGCGGGGGCATTGTGGGGGCTGTGCTCTGCCGACAGCGGCAAGATCGTTTCGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCA < 4:26843/147‑1 CGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCA < 6:127957/147‑1 CGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCA < 1:74425/147‑1 TGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACCGCGGCAAGATCGATACGCCAAGGCCGGAAGCCCCCATGTGACGGATGGTTTCCAGTGAGCTGGACTC > 7:139511/1‑148 ACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGCTACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCG > 3:110690/1‑148 CCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGAGAGCTGGACTCGACAGT > 4:36541/1‑148 CGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTG > 2:149205/1‑148 GCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTGGTGTGCCTTGAGC > 1:12026/1‑148 GTCAACGGGCGCACTGCGATGACGCCGGGGGCATAGTGGGGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTGGTGTGCCTTGAGCCTT < 5:7910/148‑1 GGGACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056826‑6056673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgccgTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTGGTGTGCCTTGAGCCTT < NC_002947/6056666‑6056520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |