Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	6,056,675	(GCACCG)2→1	coding (802‑807/927 nt)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	6056667	6056672	6	42 [0]	[0] 42	oxyR	oxidative and nitrosative stress transcriptional dual regulator

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6056673 =	0 (0.000)	40 (1.210)	32/274	0.2	100%	coding (800/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	= 6056666	0 (0.000)					coding (793/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator

CAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGA  >  NC_002947/6056526‑6056807                                                                                                                                                    |                                                                                                                                       aaggctcaaggcacaccacggtcgagtccagctcactggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagcccccactatgcccccggcgtcatcgcagtgcgcccgttgac                                                                                                                                        <  5:7910‑M1/1‑1 (MQ=255)    gctcaaggcacaccacggtcgagtccagctcactggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGc                                                                                                                                     >  1:12026‑M1/145‑148 (MQ=255)                 cacggtcgagtccagctcactggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACg                                                                                                                        >  2:149205‑M1/132‑148 (MQ=255)                  actgtcgagtccagctctctggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACgg                                                                                                                       >  4:36541‑M1/131‑148 (MQ=255)                   cggtcgagtccagctcactggaaaccatccgtcacatggtggcttccggccttggcgtagcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGt                                                                                                                      >  3:110690‑M1/130‑148 (MQ=255)                        gagtccagctcactggaaaccatccgtcacatgggggcttccggccttggcgtatcgatcttgccgcggtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCa                                                                                                                 >  7:139511‑M1/125‑148 (MQ=255)                                     tggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGgcgcg                                                                                                     <  6:127957‑M1/36‑1 (MQ=255)                                     tggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGgcgcg                                                                                                     <  1:74425‑M1/36‑1 (MQ=255)                                     tggaaaccatccgtcacatggtggcttccggccttggcgaaacgatcttgccgctgtcggcagagcacagcccccacaatgcccccgccggcatcgaagtgcccccgtagaCGGCACCGTTCCGCAGGGTAGCCATCCCCTGgcgcg                                                                                                     <  4:26843‑M1/36‑1 (MQ=255)                                        aaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGcgccgg                                                                                                 >  8:92539‑M1/109‑146 (MQ=255)                                        aaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCa                                                                                                  >  2:22194‑M1/109‑147 (MQ=255)                                          accatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCt                                                                                               <  2:75388‑M1/42‑1 (MQ=255)                                                  tcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagcccccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCgg                                                                                       <  2:144638‑M1/50‑1 (MQ=255)                                                              ttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCAt                                                                            <  4:69842‑M1/61‑1 (MQ=255)                                                              ttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCAt                                                                            <  4:132577‑M1/61‑1 (MQ=255)                                                                   gccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGAt                                                                      <  4:64753‑M1/67‑1 (MQ=255)                                                                      ttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCt                                                                   <  7:172002‑M1/70‑1 (MQ=255)                                                                      ttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCt                                                                   >  1:143314‑M1/79‑148 (MQ=255)                                                                      ttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCt                                                                   >  1:146069‑M1/79‑148 (MQ=255)                                                                           gtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCg                                                              <  7:153299‑M1/75‑1 (MQ=255)                                                                               cgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGAtt                                                           >  1:75388‑M1/70‑147 (MQ=255)                                                                               cgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGAtt                                                           >  2:178395‑M1/70‑147 (MQ=255)                                                                                       ccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGa                                                        >  1:144373‑M1/62‑142 (MQ=255)                                                                                          ctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCtgt                                               <  3:48690‑M1/90‑1 (MQ=255)                                                                                                   gtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCAt                                                                            <  7:52108‑M1/61‑1 (MQ=255)                                                                                                   gtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCg                                      >  8:87565‑M1/50‑148 (MQ=255)                                                                                                    tgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATc                                                                           >  8:52108‑M1/49‑110 (MQ=255)                                                                                                             accactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAAccc                            <  4:113032‑M1/109‑1 (MQ=255)                                                                                                                 ctatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCg                        >  3:64753‑M1/36‑148 (MQ=255)                                                                                                                  tatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCg                        <  5:24229‑M1/113‑1 (MQ=255)                                                                                                                        cccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaac                 >  2:74425‑M1/29‑148 (MQ=255)                                                                                                                         ccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCg                                                    <  2:90725‑M1/85‑1 (MQ=255)                                                                                                                          cggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGc                                                   >  1:90725‑M1/27‑112 (MQ=255)                                                                                                                             cgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAA‑CCCTGCGGAACAACCGGCCt           >  8:137763‑M1/24‑148 (MQ=255)                                                                                                                                catcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGa         <  5:127168‑M1/128‑1 (MQ=255)                                                                                                                                catcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGa         >  3:69842‑M1/21‑148 (MQ=255)                                                                                                                                 atcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAg        <  1:41470‑M1/129‑1 (MQ=255)                                                                                                                                  tcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGCACAACCGGCCTGAg        <  3:145837‑M1/129‑1 (MQ=255)                                                                                                                                       gtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCAtga  >  8:160274‑M1/14‑148 (MQ=255)                                                                                                                                       gtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCAtga  >  5:148400‑M1/14‑148 (MQ=255)                                                                                                                                                ttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaa                  <  1:56406‑M1/119‑1 (MQ=255)                                                                                                                                                 tgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaac                 >  2:56406‑M1/4‑123 (MQ=255)                                                                                                                                                    |                                                                                                                                       CAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGA  >  NC_002947/6056526‑6056807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑