New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 136939	52 (1.030)	4 (0.080)	4/244	NT	8.1%	intergenic (+35/‑161)	amiD/PP_0131	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase/membrane‑anchored phosphodiesterase
	?	NC_002947	= 137001	41 (0.860)					intergenic (+97/‑99)	amiD/PP_0131	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase/membrane‑anchored phosphodiesterase

TCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/136789‑136939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttgTGGCTGCGATGCGACCGTTAAGTCGATACAACTGCGTCGACCCAACTCGCCTCTTCGCAGCGCAAGGCTTTGCAACAAGGACCCCGCCCGCCGTGACTCAACGCATGCGGTTAAGTACCTGCAGCATCGCTGCTGTCTGCG  <  NC_002947/137001‑136861                                                                                                                                                                                                                                                                                                      TCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCC                                                                                                                                                  <  3:145394/148‑1   GCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTG                                                                                                                                               >  3:261327/1‑149   GCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTG                                                                                                                                               <  4:84780/149‑1   GCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTG                                                                                                                                               >  5:188724/1‑149   GCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTG                                                                                                                                               <  7:86974/149‑1         CGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTT                                                                                                                                                >  1:149587/1‑142         CGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTT                                                                                                                                                <  2:149587/142‑1                                                     CTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGTGGCTGCGATGCGACCGTTAAGTCGATACAACTGCGTCGACCCAACTCGC                                                                                             >  2:74605/1‑149                                                                          GCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGTGGCTGCGATGCGACCGTTAAGTCGATACAACTACGTCGACCCAACTCGCCTCTTCGCAGCGCAAGGCTTT                                                                        >  5:235092/1‑149                                                                          GCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGTGGCTGCGATGCGACCGTTAAGTCGATACAACTACGTCGACCCAACTCGCCTCTTCGCAGCGCAAGGCTTT                                                                        <  6:235092/149‑1                                                                              ACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGTGGCTGCGATGCGACCGTTAAGTCGATACAACTGCGTCGACCCAACTCGCCTCTTCGCAGCGCAAGGCTTTGCAA                                                                    <  1:74605/149‑1                                                                                                                                                 AGCCTTGTGGCTGCGATGCGACCGTTAAGTCGATACAACTGCGTCGACCCAACTCGCCTCTTCGCAGCGCAAGGCTTTGCAACAAGGACCCCGCCCGCCGTGACTCAACGCATGCGGTTAAGTACCTGCAGCATCGCTGCTGTCTGCG  >  7:66236/1‑148                                                                                                                                                                                                                                                                                                      TCGCCACACGTCATGTGGTCGCCGCCTTCCAGATGCGCTTCCGCCCGCAGCGCTTCGACGGTATGCCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/136789‑136939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttgTGGCTGCGATGCGACCGTTAAGTCGATACAACTGCGTCGACCCAACTCGCCTCTTCGCAGCGCAAGGCTTTGCAACAAGGACCCCGCCCGCCGTGACTCAACGCATGCGGTTAAGTACCTGCAGCATCGCTGCTGTCTGCG  <  NC_002947/137001‑136861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.