New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 136939	52 (1.030)	4 (0.080)	4/244	NT	8.1%	intergenic (+35/‑161)	amiD/PP_0131	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase/membrane‑anchored phosphodiesterase
	?	NC_002947	= 137001	41 (0.860)					intergenic (+97/‑99)	amiD/PP_0131	1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase/membrane‑anchored phosphodiesterase

CCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCGCCAAATTTTTTACCG  >  NC_002947/136854‑137149                                                                                                                                                    |                                                                                                                                                      ccGGATGCGCAGACAGCAGCGATGCTACAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCca                                                                                                                                                       <  3:197568/148‑1 (MQ=255)        cgcAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCAcaaggct                                                                                                                                                >  7:66236‑M2/1‑141 (MQ=255)          cAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGtt                                                                                                                                             >  7:156074/1‑149 (MQ=255)                     gATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAgcg                                                                                                                                  >  5:112199/1‑149 (MQ=255)                         ctgcAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCgt                                                                                                                               <  6:112199/148‑1 (MQ=255)                          tgcAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCgtgg                                                                                                                             >  8:224337/1‑149 (MQ=255)                             aGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCgtgggtg                                                                                                                          >  2:202536/1‑149 (MQ=255)                                  cTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GAtt                                                                                                                     <  8:156074/148‑1 (MQ=255)                                     aaCCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAg                                                                                                                 >  7:37742/1‑149 (MQ=255)                                          cATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAg                                                                                                            >  2:3310/1‑149 (MQ=255)                                                ttGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCa                                                                                                       >  1:116614/1‑148 (MQ=255)                                                     tCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGt                                                                                                 <  1:3310/149‑1 (MQ=255)                                                     tCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGt                                                                                                 >  7:20893/1‑149 (MQ=255)                                                       aCGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGt                                                                                                 >  4:215176/1‑147 (MQ=255)                                                         ggcgggcgGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTTACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAgg                                                                                             <  7:178927/149‑1 (MQ=255)                                                                   gTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGattatt                                                                                    >  3:187914/1‑148 (MQ=255)                                                                   gTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGAAGCGAAGCGCCAAACGGTGAGGGTGattatt                                                                                    >  2:286727/1‑148 (MQ=255)                                                                     ccTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCgtgg                                                                                                                             <  7:284905/106‑1 (MQ=255)                                                                     ccTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCgtgg                                                                                                                             >  8:284905/1‑106 (MQ=255)                                                                         gttgCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTcc                                                                              <  2:116614/148‑1 (MQ=255)                                                                         gttgCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCg                                                                             >  5:248132/1‑149 (MQ=255)                                                                          ttgCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCAcaaggctttgcaacaaggaccccgcccgccgtgactcaacgcatgcggttaagtacctgcagcatcgctgctgt                                                                             <  1:74605‑M2/149‑75 (MQ=255)                                                                             cAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGc                                                                         >  4:271666/1‑149 (MQ=255)                                                                              aaaGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGTAGTTGTATCGACTTAACGGTCGCATCGCAGCCAcaaggctttgcaacaaggaccccgcccgccgtgactcaacgcatgcggttaagtacctgcagcatcgctgctgtctgc                                                                         <  6:235092‑M2/149‑79 (MQ=255)                                                                              aaaGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGTAGTTGTATCGACTTAACGGTCGCATCGCAGCCAcaaggctttgcaacaaggaccccgcccgccgtgactcaacgcatgcggttaagtacctgcagcatcgctgctgtctgc                                                                         >  5:235092‑M2/1‑71 (MQ=255)                                                                              aaaGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGc                                                                         >  8:38182/1‑148 (MQ=255)                                                                              aaaGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGc                                                                         >  5:288555/1‑148 (MQ=255)                                                                                       cgcTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTgg                                                               <  8:37742/149‑1 (MQ=255)                                                                                        gcTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCTCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGt                                                              <  3:252287/149‑1 (MQ=255)                                                                                         cTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGt                                                              >  7:274831/1‑148 (MQ=255)                                                                                                gagGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACt                                                      <  6:288555/149‑1 (MQ=255)                                                                                                  ggCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTg                                                     <  8:274831/148‑1 (MQ=255)                                                                                                   gCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCAcaaggctttgcaacaaggaccccgcccgccgtgactcaacgcatgcggttaagtacctgcagcatcgctgctgtctgcgcatccggcataccgtcgaag                                                    >  2:74605‑M2/1‑50 (MQ=255)                                                                                                   gCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGt                                                              <  1:158622/138‑1 (MQ=255)                                                                                                   gCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGt                                                              >  2:158622/1‑138 (MQ=255)                                                                                                    cGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGAt                                                  <  6:248132/149‑1 (MQ=255)                                                                                                    cGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGAt                                                  <  7:224337/149‑1 (MQ=255)                                                                                                     gAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGattatt                                                                                    >  4:73773/1‑114 (MQ=255)                                                                                                     gAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGattatt                                                                                    <  3:73773/114‑1 (MQ=255)                                                                                                           ggTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATc                                                          >  6:99719/1‑134 (MQ=255)                                                                                                           ggTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATc                                                          <  5:99719/134‑1 (MQ=255)                                                                                                           ggTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTc                                            <  3:215176/148‑1 (MQ=255)                                                                                                                     gTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCt                                 <  8:20893/149‑1 (MQ=255)                                                                                                                               cTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTGACATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCt                        >  1:80257/1‑149 (MQ=255)                                                                                                                                  aaCGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTtgct                    >  2:34163/1‑149 (MQ=255)                                                                                                                                  aaCGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTtgct                    >  2:194551/1‑149 (MQ=255)                                                                                                                                   aCGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTtgctg                   >  6:241852/1‑149 (MQ=255)                                                                                                                                               caGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCGCCAAAttttt       >  2:261789/1‑149 (MQ=255)                                                                                                                                                 gCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCGCCAAATTTTTTa     <  1:194551/149‑1 (MQ=255)                                                                                                                                                  ccACAACGCTGTTTATACAAAGCTCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGCGAGGGCGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCTCCAAATTTTTTAc    <  6:316711/149‑1 (MQ=255)                                                                                                                                                   cacaAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCGCCAAATTTTTTAcc   >  2:68080/1‑149 (MQ=255)                                                                                                                                                    acaAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCGCCAAATTTTTTACCg  >  5:255522/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCGGATGCGCAGACAGCAGCGATGCTGCAGGTACTTAACCGCATGCGTTGAGTCACGGCGGGCGGGGTCCTTGTTGCAAAGCCTTGCGCTGCGAAGAGGCGAGTTGGGTCGACGCAGTTGTATCGACTTAACGGTCGCATCGCAGCCACAAGGCTGTTTCTACAAAGCGCGTGGGTG‑GATTGCAGCGAAGCGCCAAACGGTGAGGGTGATTATTGATTCCGTTGCTATACCTTGGTTATCAACTGGATGCCTTCGATGTCAGCCTTCATCGCCTTGCTGCGCCAAATTTTTTACCG  >  NC_002947/136854‑137149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.