New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 25023644 (0.870)9 (0.190) 7/238 NT 18.4% coding (967/1347 nt) nfeD membrane bound peptidase NefD
?NC_002947 = 250260 39 (0.840)coding (943/1347 nt) nfeD membrane bound peptidase NefD

GCCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/250080‑250236
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaagccTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTCC  <  NC_002947/250260‑250119
                                                                                                                                                                                                                                                                                                           
GCCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCG                                                                                                                                                        >  8:240692/1‑149
 CCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGC                                                                                                                                                       >  1:179741/1‑149
      CCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAG                                                                                                                                                  <  1:234209/149‑1
               CCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGC                                                                                                                                         >  6:168586/1‑149
                                    TCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCT                                                                                                                    >  5:167942/1‑149
                                       GGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAA                                                                                                                                                   >  5:58665/1‑115
                                       GGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAA                                                                                                                                                   <  6:58665/115‑1
                                         AGTGCCGAGAGCTGCGCGAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCATCGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGC                                                                                                               <  7:246542/149‑1
                                         AGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGC                                                                                                               <  5:168586/149‑1
                                         AGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGC                                                                                                               <  6:167942/149‑1
                                                     AGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCG                                                                                                              <  5:102483/138‑1
                                                     AGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCG                                                                                                              >  6:102483/1‑138
                                                                 CCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGC                                                                                                                                                       >  3:189213/1‑85
                                                                 CCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGC                                                                                                                                                       <  4:189213/85‑1
                                                                                        GAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGG                                                                                                                >  2:263285/1‑101
                                                                                        GAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGG                                                                                                                <  1:263285/101‑1
                                                                                                                                                     CCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTC   >  2:179741/1‑149
                                                                                                                                                     CCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTC   <  1:226678/149‑1
                                                                                                                                                      CGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTCC  >  7:240692/1‑149
                                                                                                                                                                                                                                                                                                           
GCCGGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/250080‑250236
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaagccTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTCC  <  NC_002947/250260‑250119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.