| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 390955 | 41 (0.810) | 3 (0.060) | 3/244 | NT | 6.5% | coding (1229/3015 nt) | soxA | sarcosine oxidase subunit alpha |
| ? | NC_002947 | = 391024 | 48 (1.010) | coding (1298/3015 nt) | soxA | sarcosine oxidase subunit alpha | |||||
GTTGAAGAAGCGCGTGCCAAAGGCATTCGCATACTCACCTCCAGCGCCGTGATCGAGGCCAAAGGCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/390822‑390955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaggTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGTGCTTGCTGCCTTTGG < NC_002947/391024‑390880 GTTGAAGAAGCGCGTGCCAAAGGCATTCGCATACTCACCTCCAGCGCCGTGATCGAGGCCAAAGGCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGG < 7:285634/134‑1GTTGAAGAAGCGCGTGCCAAAGGCATTCGCATACTCACCTCCAGCGCCGTGATCGAGGCCAAAGGCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGG > 8:285634/1‑134 CAAAGGCATTCGCATACTCACCTCCAGCGCCGTGATCGAGGCCAAAGGCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACC > 8:27324/1‑149 AAGGCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGC < 5:173094/149‑1 GCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGG < 7:27324/149‑1 CCAGGTGCGAAGCCAGGTGCACGTTCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCTCCGCCACACGGGCGCCGGTGACGT < 7:248724/135‑1 CCAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGTGCTTGCTGCCTTTG > 4:42721/1‑149 CCAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGTGCTTGCTGCCTTTG < 6:177706/149‑1 CCAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGT > 8:248724/1‑135 CAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGTGCTTGCTGCCTTTGG > 5:207258/1‑149 CAGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGTGCTTGCTGCCTTTGG < 6:192500/149‑1 AGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATC < 5:10881/108‑1 AGGTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATC > 6:10881/1‑108 GTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGA < 3:117537/65‑1 GTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGA > 4:117537/1‑65 GTTGAAGAAGCGCGTGCCAAAGGCATTCGCATACTCACCTCCAGCGCCGTGATCGAGGCCAAAGGCAGCAAGCACGTCACCGGCGCCCGTGTGGCGGCGATCGATGTGCAGGCGCACAAAGTCACCAGCCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/390822‑390955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccaggTGCGAAGCCAGGTGCACGATCGGGCTGTAACCGCCCGAGGAGGCGATCAGGTCGCACTCAAGGACTTCGCCTGGGCTGGTGACTTTGTGCGCCTGCACATCGATCGCCGCCACACGGGCGCCGGTGACGTGCTTGCTGCCTTTGG < NC_002947/391024‑390880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |