New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 437616	40 (0.790)	3 (0.060)	3/248	NT	6.5%	coding (744/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	= 437674	48 (0.990)					coding (686/1008 nt)	rdoA	serine/threonine protein kinase

GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/437468‑437616 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgACGATTGCCGCATGGGCCCAGCGGTGCAAGACCTGTGGATGATGCTGGCCGGCAACCGCGAGGAGCGCCTGGGGCAACTGGCCGAGCTGATCGACGGCTACAACGAGTTCCACGACTTCGACCCGCGCGAACTGGCCCTGATCGAGCC  <  NC_002947/437674‑437527                                                                                                                                                                                                                                                                                                           GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCG                                                                                                                                                      <  2:238947/149‑1                                             CGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGACGATTGCCGCATGGGCCCAGCGGAGCAAGACCTGTGGATGATG                                                                                                          >  4:57374/1‑149                                                               TCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGACGATTGCCGCATGGGCCCAGCGGTGCAAGACCTGTGGATGATGCTGGCCGGCAACCGCGAG                                                                                        <  3:121135/149‑1                                                                     AGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGACGATTGCCGCATGGGCCCAGCGGTGCAAGACCTGTGGATGATGCTGGCCGGCAACCGCGAGGAGCGC                                                                                  <  3:57374/149‑1                                                                                                                                                     GACGATTGCCGCATGGGCCCAGCGGTGCAAGACCTGTGGATGATGCTGGCCGGCAACCGCGAGGAGCGCCTGGGGCAACTGGCCGAGCTGATCGACGGCTACAACGAGTTCCACGACTTCGACCCGCGCGAACTGGCCCTGATCGAGCC  >  6:74867/1‑149                                                                                                                                                     GACGATTGCCGCATGGGCCCAGCGGTGCAAGACCTGTGGATGATGCTGGCCGGCAACCGCGAGGAGCGCCTGGGGCAACTGGCCGAGCTGATCGACGGCTACAACGAGTTCCACGACTTCGACCCGCGCGAACTGGCCCTGATCGAGC   <  2:249338/148‑1                                                                                                                                                                                                                                                                                                           GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/437468‑437616 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcgACGATTGCCGCATGGGCCCAGCGGTGCAAGACCTGTGGATGATGCTGGCCGGCAACCGCGAGGAGCGCCTGGGGCAACTGGCCGAGCTGATCGACGGCTACAACGAGTTCCACGACTTCGACCCGCGCGAACTGGCCCTGATCGAGCC  <  NC_002947/437674‑437527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.