New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 437616	40 (0.790)	3 (0.060)	3/248	NT	6.5%	coding (744/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	= 437674	48 (0.990)					coding (686/1008 nt)	rdoA	serine/threonine protein kinase

GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGC  >  NC_002947/437468‑437764                                                                                                                                                     |                                                                                                                                                     ggTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCG                                                                                                                                                      <  2:238947‑M1/149‑1 (MQ=255)            cgcCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGc                                                                                                                                           <  4:59264/149‑1 (MQ=255)              ccTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCa                                                                                                                                         <  6:42248/149‑1 (MQ=255)                ttGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAg                                                                                                                                        >  8:39964/1‑148 (MQ=255)                  gccagccaGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCGCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGca                                                                                                                                      <  6:229715/148‑1 (MQ=255)                   ccagccagGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGcat                                                                                                                                     >  5:154141/1‑148 (MQ=255)                             gcTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCGCCTCGCGGTTGCCGGCCCGCATCATCCACAg                                                                                                                            >  3:26898/1‑147 (MQ=255)                             gcTATAGGGCAGCGGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTGCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGGTGCCGGCCAGCATCATCCACAg                                                                                                                            <  4:26898/147‑1 (MQ=255)                               tataGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCt                                                                                                                        <  2:143882/149‑1 (MQ=255)                                 taGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTg                                                                                                                      <  3:309315/149‑1 (MQ=255)                                       aGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGc                                                                                                                <  3:187409/149‑1 (MQ=255)                                            gcgcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGca                                                                                                                                      >  6:47593/1‑122 (MQ=255)                                            gcgcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGca                                                                                                                                      <  7:197659/122‑1 (MQ=255)                                            gcgcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGca                                                                                                                                      <  5:47593/122‑1 (MQ=255)                                            gcgcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGca                                                                                                                                      >  8:197659/1‑122 (MQ=255)                                             cgcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGacgattgccgcatgggcccagcggagcaagacctgtggatgatg                                                                                                          >  4:57374‑M1/1‑105 (MQ=255)                                              gcAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGcc                                                                                                          >  2:33249/1‑148 (MQ=255)                                                aGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCAt                                                                                                       <  2:318409/149‑1 (MQ=255)                                                 gggCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATg                                                                                                      <  7:39964/149‑1 (MQ=255)                                                            ggCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTc                                                                                           >  6:74867‑M2/1‑148 (MQ=255)                                                             gCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTc                                                                                           <  2:249338‑M2/148‑2 (MQ=255)                                                               tCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcgag                                                                                        <  3:121135‑M1/149‑63 (MQ=255)                                                                cGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCg                                                                                                                 >  4:128027/1‑123 (MQ=255)                                                                cGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCg                                                                                                                 <  3:128027/123‑1 (MQ=255)                                                                   tCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGTCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTc                                                                                     >  3:48325/1‑148 (MQ=255)                                                                     aGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcgaggagcgc                                                                                  <  3:57374‑M1/149‑69 (MQ=255)                                                                     aGGCCCAGTTCGCGCGGGTCGAAGTCGTTGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGa                                                                                   <  8:219930/148‑1 (MQ=255)                                                                      gggCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGAcc                                                                                 >  2:272991/1‑149 (MQ=255)                                                                                gcgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTaca                                                                       >  1:309175/1‑149 (MQ=255)                                                                                 cgcgGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTacac                                                                      <  1:249338/149‑1 (MQ=255)                                                                                      gTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTc                                                                                     <  6:56346/129‑1 (MQ=255)                                                                                      gTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTc                                                                                     >  5:56346/1‑129 (MQ=255)                                                                                          aaGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATcgcg                                                             <  1:33249/149‑1 (MQ=255)                                                                                          aaGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATcgcg                                                             >  1:119360/1‑149 (MQ=255)                                                                                             tCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTg                                                          <  6:154141/149‑1 (MQ=255)                                                                                                tGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCAt                                                       >  5:79561/1‑149 (MQ=255)                                                                                                        gTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCAt                                                                                                       >  1:87767/1‑93 (MQ=255)                                                                                                        gTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCAt                                                                                                       <  2:87767/93‑1 (MQ=255)                                                                                                              gCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCgggg                                          <  2:309175/148‑1 (MQ=255)                                                                                                               ccGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTg                                        >  8:270096/1‑149 (MQ=255)                                                                                                                cGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTg                                        >  2:95594/1‑148 (MQ=255)                                                                                                                     aTCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCCCCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGGCGGGGTGCAGGTc                                  >  4:160585/1‑149 (MQ=255)                                                                                                                     aTCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCAc                                                                               >  4:238289/1‑104 (MQ=255)                                                                                                                     aTCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCAc                                                                               <  3:238289/104‑1 (MQ=255)                                                                                                                         gCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCg                              >  1:144475/1‑149 (MQ=255)                                                                                                                                    tGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGAt                   <  1:272991/149‑1 (MQ=255)                                                                                                                                            gcgcTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccct           <  3:57374‑M2/149‑82 (MQ=255)                                                                                                                                                  ctcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccctgatcga     <  3:121135‑M2/149‑88 (MQ=255)                                                                                                                                                  ctcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCCCGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTAGCCGTGCAGGCGGATGCGGtggtgtggtg     >  5:173441/1‑149 (MQ=255)                                                                                                                                                  ctcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCtggtgtgg       <  1:95594/147‑1 (MQ=255)                                                                                                                                                  ctcGCGGTTGCCGGCCAGCATCAT‑CACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTg                                                          <  1:285647/95‑1 (MQ=255)                                                                                                                                                  ctcGCGGTTGCCGGCCAGCATCAT‑CACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTg                                                          >  2:285647/1‑95 (MQ=255)                                                                                                                                                   tcGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTggtgtggtgt    >  5:313529/1‑149 (MQ=255)                                                                                                                                                    cgcgGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGgtgtggtgtg   >  5:286648/1‑149 (MQ=255)                                                                                                                                                     gcgGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGc  >  3:45888/1‑149 (MQ=255)                                                                                                                                                     gacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccctgatcgagcc  >  6:74867‑M1/1‑1 (MQ=255)                                                                                                                                                     gacgattgccgcatgggcccagcggtgcaagacctgtggatgatgctggccggcaaccgcgaggagcgcctggggcaactggccgagctgatcgacggctacaacgagttccacgacttcgacccgcgcgaactggccctgatcgagc   <  2:249338‑M1/148‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGTCGTCCCAGCGCCTTGCCAGCCAGGCGCTATAGTGCAGCTGGCGCAGGGCGCGCAGGGGCTCGATCAGGGCCAGTTCGCGCGGGTCGAAGTCGTGGAACTCGTTGTAGCCGTCGATCAGCTCGGCCAGTTGCCCCAGGCGCTCCTCGCGGTTGCCGGCCAGCATCATCCACAGGTCTTGCACCGCTGGGCCCATGCGGCAATCGTCGAGGTCGACCACGTGGTACACCTCATCGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGC  >  NC_002947/437468‑437764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.