| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 743324 | NA (NA) | 4 (0.080) | 4/252 | NT | NA | intergenic (+3/+271) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein |
| ? | NC_002947 | = 743350 | NA (NA) | intergenic (+29/+245) | PP_0635/PP_0636 | group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein | |||||
TGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743174‑743324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGAC < NC_002947/743350‑743203 ggcgAACAAGTCAGCCTTCTATGGCCGAGGTCTATGGTGGACTTCGGGAGCGCAACATATGAACTACTCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAA < 4:35475/145‑1TGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGTGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAA > 6:4133/1‑149TGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAA < 5:85978/149‑1 GCCAACAAGTCAGCCTTCAATGGCCGAGGTGCATGGTGGAATTCGGGAGCGCAACATATGAACTAAGCGATGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC > 5:27939/1‑149 GCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC > 1:217041/1‑149 GCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC > 2:51412/1‑149 GCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC > 4:242183/1‑149 CCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACC > 1:151403/1‑149 CCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC < 2:28412/148‑1 AATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC < 8:290312/131‑1 AATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC > 7:290312/1‑131 CCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC > 3:87260/1‑126 CCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAAC < 4:87260/126‑1 GAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCACCGTGCGTACGGTTCCGTACACGGCGGTTC > 8:90631/1‑104 GAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCACCGTGCGTACGGTTCCGTACACGGCGGTTC < 7:90631/104‑1 ACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCACCGTGCGTACGGTTCCGTACACGGCGGTTCA > 5:71557/1‑102 ACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACCACCGTGCGTACGGTTCCGTACACGGCGGTTCA < 6:71557/102‑1 ACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGG > 3:49955/1‑149 ACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATG > 3:100053/1‑148 ACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATG > 7:270261/1‑148 ACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTT > 2:293140/1‑127 ACCACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTT < 1:293140/127‑1 CACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGAC < 1:193186/149‑1 CACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGAC < 6:297250/149‑1 CACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGAC < 6:148487/149‑1 CACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGAC > 3:229346/1‑149 CACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTC < 6:272423/139‑1 CACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTC > 5:272423/1‑139 TGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATACTGGATACGATTAACCGGCTTAGCCGCGTAACCTGAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/743174‑743324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accACCGTGCGTACGGTTCCGTACACGGCGGTTCAGGTTACGCGGCTAAGCCGGTTAATCGTATCCAGTATCGAGACCAGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGAC < NC_002947/743350‑743203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |