| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 877211 = | 51 (1.010) | 4 (0.080) | 4/244 | NT | 7.2% | intergenic (‑53/+2) | rsmC/hprA | 16S rRNA methyltransferase/glycerate dehydrogenase |
| ? | NC_002947 | 877271 = | 55 (1.150) | coding (908/966 nt) | hprA | glycerate dehydrogenase | |||||
ACCCGCTGCTGGAGCCCGGCATCCCGCGCCTGATCATCACCCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/877361‑877211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgagcTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGGGTTGCCGTTGACCGGCGGCTCCACGCTCAGCACGTCGGTGGCCGCGCCGCC > NC_002947/877271‑877410 ACCCGCTGCTGGAGCCCGGCATCCCGCGCCTGATCATCACCCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCT > 8:262500/1‑147 CCGCTGCTGGAGCCCGGCATCCCGCGCCTGATCATCACCCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGC < 7:262500/149‑1 CGCTGCTGGAGCCCGGCATCCCGCGCCTGATCATCACCCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGC > 3:285311/1‑148 GCTGGAGCCCGGCATCCCGCGCCTGATCATCACCCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGCTCAGCTGAccacgcg < 5:241474/149‑8 CCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTG < 1:294161/108‑1 CCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTG > 2:294161/1‑108 CCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGCTGCCCGACGAAGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAG > 5:67133/1‑149 AGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGCTGGCCGACGATGCGCTGGCGCGA < 3:132109/79‑1 AGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGCTGGCCGACGATGCGCTGGCGCGA > 4:132109/1‑79 taagGCCCAGGCCTTCTTCGCCGGGCAGCCTCGCCGCGTGGTCAGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGGGCGGGATGCCGGGCTCCAGCAGCGGGTTGCCGTT < 6:67133/145‑1 GCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGGGTTGCCGTTGACCGGCGGCTCCACGCTCAGCACGTCGGTGGCCGCGCCGCC > 4:44057/1‑147 GCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGGGTTGCCGTTGACCGGCGGCTCCACGCTCAGCACGTCGGTGGCCGCGCCGC < 8:113296/146‑1 ACCCGCTGCTGGAGCCCGGCATCCCGCGCCTGATCATCACCCCGCACAGCGCCTGGGGTGCCGTGGAGTCGCGCCAGCGCATCGTCGGCCAGCTCAGCGAGAACGCCCAGGCCTTCTTCGCCGGGCAGCCACGCCGCGTGGTCAGCTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/877361‑877211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgagcTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGGGTTGCCGTTGACCGGCGGCTCCACGCTCAGCACGTCGGTGGCCGCGCCGCC > NC_002947/877271‑877410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |