New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 877211 = | 51 (1.010) | 4 (0.080) | 4/244 | NT | 7.2% | intergenic (‑53/+2) | rsmC/hprA | 16S rRNA methyltransferase/glycerate dehydrogenase |
? | NC_002947 | 877271 = | 55 (1.150) | coding (908/966 nt) | hprA | glycerate dehydrogenase |
GCAGGTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGG > NC_002947/877071‑877359 | ggcggcgcggccaccgacgtgctgagcgtggagccgccggtcaacggcaacccgctgctggagcccggcatcccgcgcctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcatcgtcggccagctcagc > 4:44057‑M1/141‑147 (MQ=255) gcggcgcggccaccgacgtgctgagcgtggagccgccggtcaacggcaacccgctgctggagcccggcatcccgcgcctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcatcgtcggccagctcagc < 8:113296‑M1/7‑1 (MQ=255) ggTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑c < 5:311275/148‑1 (MQ=255) ggTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑c > 6:311275/1‑148 (MQ=255) gtcgtcGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCa > 7:213620/1‑149 (MQ=255) gtcgtcGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCa > 4:128092/1‑149 (MQ=255) gggCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGTGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGc > 5:213698/1‑149 (MQ=255) cGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCAcg > 6:176177/1‑134 (MQ=255) cGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCAcg < 5:176177/134‑1 (MQ=255) gCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGc < 3:39404/149‑1 (MQ=255) gATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGTGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCga < 6:213698/149‑1 (MQ=255) agcagcGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGG‑AAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGaagaag > 6:117464/1‑149 (MQ=255) cagcGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAgg > 8:120245/1‑149 (MQ=255) agcGGCCCCTGAAACAGCTCTGCCTCCCGGAGCAACACTTCACTTCGCGGGGCCATGTACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGc < 6:151387/149‑1 (MQ=255) ggCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGG‑AAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTgg < 5:117464/149‑1 (MQ=255) cccTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGc < 3:128092/149‑1 (MQ=255) aacggcaacccgctgctggagcccggcatcccgcccctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcatcgtcggccaGCTCAGCTGA‑CCACGCGGCGAGGCTGCCCGGCGAAGAAGGCCtgggcctta < 6:67133‑M1/51‑5 (MQ=255) aaCAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTCGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTtctc < 1:40247/149‑1 (MQ=255) aCAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCg > 6:127878/1‑149 (MQ=255) ctgctggagcccggcatcccgcgcctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcttcgtcgggcaGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTgg > 5:67133‑M1/87‑149 (MQ=255) ccTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTgg > 5:7451/1‑149 (MQ=255) tGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGcc > 5:29303/1‑149 (MQ=255) aCGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCCCCGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCATTCTCGCTGAGCTGGc < 1:80125/147‑1 (MQ=255) aaCACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATgcg > 5:58717/1‑149 (MQ=255) acacTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATgcgc > 3:299541/1‑149 (MQ=255) cacTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCt > 7:185858/1‑149 (MQ=255) cTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGc > 4:42865/1‑118 (MQ=255) cTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGc < 3:42865/118‑1 (MQ=255) cACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGgcgc > 3:225540/1‑149 (MQ=255) cACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGgcg < 8:213620/148‑1 (MQ=255) cACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGgc < 5:98853/147‑1 (MQ=255) aCTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcga < 7:238298/134‑1 (MQ=255) aCTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcga > 8:238298/1‑134 (MQ=255) tGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGAc > 2:237815/1‑149 (MQ=255) gcgGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTc > 8:177910/1‑148 (MQ=255) ggTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACg < 6:58717/149‑1 (MQ=255) ggACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCAccc > 1:90796/1‑148 (MQ=255) ggACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCAccc > 6:145236/1‑148 (MQ=255) acgacgTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAg > 5:132152/1‑149 (MQ=255) acgTCTACTGGAAAAAAGTACCGCACTGAAACACAGGCGGCCGCCTGGCTCAGCTGA‑CCACGCGCCGTCGATGCCAGGCGAAGAAGGACACGGCATTCTCGCTTACAAGGCAGACGATGCTCTGCCGCGACTCCACGGAACCCCAGgcg > 8:10995/1‑149 (MQ=255) cTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCtgt < 5:145236/146‑1 (MQ=255) tGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCgg > 5:252341/1‑149 (MQ=255) gAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCgggg < 7:120245/149‑1 (MQ=255) aaaaaaGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATg > 4:91324/1‑108 (MQ=255) aaaaaaGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATg < 3:91324/108‑1 (MQ=255) aaaaaGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCCGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACCGCACCCCAGGCGCTGGGCGGGGt > 7:247241/1‑148 (MQ=255) tcgcgccagcgcatcgtcggccaGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCt > 4:132109‑M1/24‑79 (MQ=255) tcgcgccagcgcatcgtcggccaGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCt < 3:132109‑M1/56‑1 (MQ=255) gtgtAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGcgcg < 1:237815/149‑1 (MQ=255) tAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGa > 4:285311/1‑149 (MQ=255) aaCAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGAt > 1:322870/1‑149 (MQ=255) aCAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATg > 1:98558/1‑149 (MQ=255) agagGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcgacg > 4:50178/1‑84 (MQ=255) agagGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcgacg < 3:50178/84‑1 (MQ=255) gagGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCg < 4:299541/149‑1 (MQ=255) gcgggcgCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGc > 8:131068/1‑149 (MQ=255) ggcgCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTcc < 7:177910/149‑1 (MQ=255) GCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCgg < 7:262500‑M1/149‑1 (MQ=255) GCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCg > 3:285311‑M1/1‑148 (MQ=255) | GCAGGTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGA‑CCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGG > NC_002947/877071‑877359 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |