New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 877211 =51 (1.010)4 (0.080) 4/244 NT 7.2% intergenic (‑53/+2) rsmC/hprA 16S rRNA methyltransferase/glycerate dehydrogenase
?NC_002947 877271 = 55 (1.150)coding (908/966 nt) hprA glycerate dehydrogenase

GCAGGTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGG  >  NC_002947/877071‑877359
                                                                                                                                            |                                                                                                                                                     
ggcggcgcggccaccgacgtgctgagcgtggagccgccggtcaacggcaacccgctgctggagcccggcatcccgcgcctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcatcgtcggccagctcagc                                                                                                                                                 >  4:44057‑M1/141‑147 (MQ=255)
 gcggcgcggccaccgacgtgctgagcgtggagccgccggtcaacggcaacccgctgctggagcccggcatcccgcgcctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcatcgtcggccagctcagc                                                                                                                                                 <  8:113296‑M1/7‑1 (MQ=255)
   ggTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGAc                                                                                                                                            <  5:311275/148‑1 (MQ=255)
   ggTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGAc                                                                                                                                            >  6:311275/1‑148 (MQ=255)
    gtcgtcGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCa                                                                                                                                          >  7:213620/1‑149 (MQ=255)
    gtcgtcGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCa                                                                                                                                          >  4:128092/1‑149 (MQ=255)
               gggCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGTGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGc                                                                                                                               >  5:213698/1‑149 (MQ=255)
                     cGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCAcg                                                                                                                                        >  6:176177/1‑134 (MQ=255)
                     cGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCAcg                                                                                                                                        <  5:176177/134‑1 (MQ=255)
                       gCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGc                                                                                                                       <  3:39404/149‑1 (MQ=255)
                         gATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGTGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCga                                                                                                                     <  6:213698/149‑1 (MQ=255)
                             agcagcGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGaagaag                                                                                                                >  6:117464/1‑149 (MQ=255)
                               cagcGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAgg                                                                                                               >  8:120245/1‑149 (MQ=255)
                                agcGGCCCCTGAAACAGCTCTGCCTCCCGGAGCAACACTTCACTTCGCGGGGCCATGTACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGc                                                                                                              <  6:151387/149‑1 (MQ=255)
                                   ggCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTgg                                                                                                          <  5:117464/149‑1 (MQ=255)
                                      cccTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGc                                                                                                        <  3:128092/149‑1 (MQ=255)
                                          aacggcaacccgctgctggagcccggcatcccgcccctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcatcgtcggccaGCTCAGCTGACCACGCGGCGAGGCTGCCCGGCGAAGAAGGCCtgggcctta                                                                                                    <  6:67133‑M1/51‑5 (MQ=255)
                                            aaCAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTCGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTtctc                                                                                                  <  1:40247/149‑1 (MQ=255)
                                             aCAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCg                                                                                                 >  6:127878/1‑149 (MQ=255)
                                                      ctgctggagcccggcatcccgcgcctgatcatcaccccgcacagcgcctggggtgccgtggagtcgcgccagcgcttcgtcgggcaGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTgg                                                                                        >  5:67133‑M1/87‑149 (MQ=255)
                                                      ccTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTgg                                                                                        >  5:7451/1‑149 (MQ=255)
                                                        tGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGcc                                                                                      >  5:29303/1‑149 (MQ=255)
                                                          aCGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCCCCGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCATTCTCGCTGAGCTGGc                                                                                       <  1:80125/147‑1 (MQ=255)
                                                                 aaCACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATgcg                                                                             >  5:58717/1‑149 (MQ=255)
                                                                  acacTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATgcgc                                                                            >  3:299541/1‑149 (MQ=255)
                                                                   cacTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCt                                                                           >  7:185858/1‑149 (MQ=255)
                                                                     cTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGc                                                                                                        >  4:42865/1‑118 (MQ=255)
                                                                     cTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGc                                                                                                        <  3:42865/118‑1 (MQ=255)
                                                                        cACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGgcgc                                                                      >  3:225540/1‑149 (MQ=255)
                                                                        cACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGgcg                                                                       <  8:213620/148‑1 (MQ=255)
                                                                        cACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGgc                                                                        <  5:98853/147‑1 (MQ=255)
                                                                         aCTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcga                                                                                    <  7:238298/134‑1 (MQ=255)
                                                                         aCTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcga                                                                                    >  8:238298/1‑134 (MQ=255)
                                                                           tGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGAc                                                                   >  2:237815/1‑149 (MQ=255)
                                                                              gcgGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTc                                                                 >  8:177910/1‑148 (MQ=255)
                                                                                 ggTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACg                                                             <  6:58717/149‑1 (MQ=255)
                                                                                        ggACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCAccc                                                       >  1:90796/1‑148 (MQ=255)
                                                                                        ggACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCAccc                                                       >  6:145236/1‑148 (MQ=255)
                                                                                          acgacgTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAg                                                    >  5:132152/1‑149 (MQ=255)
                                                                                             acgTCTACTGGAAAAAAGTACCGCACTGAAACACAGGCGGCCGCCTGGCTCAGCTGACCACGCGCCGTCGATGCCAGGCGAAGAAGGACACGGCATTCTCGCTTACAAGGCAGACGATGCTCTGCCGCGACTCCACGGAACCCCAGgcg                                                 >  8:10995/1‑149 (MQ=255)
                                                                                                    cTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCtgt                                             <  5:145236/146‑1 (MQ=255)
                                                                                                     tGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCgg                                         >  5:252341/1‑149 (MQ=255)
                                                                                                       gAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCgggg                                       <  7:120245/149‑1 (MQ=255)
                                                                                                        aaaaaaGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATg                                                                               >  4:91324/1‑108 (MQ=255)
                                                                                                        aaaaaaGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATg                                                                               <  3:91324/108‑1 (MQ=255)
                                                                                                         aaaaaGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCCGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACCGCACCCCAGGCGCTGGGCGGGGt                                      >  7:247241/1‑148 (MQ=255)
                                                                                                                     tcgcgccagcgcatcgtcggccaGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCt                                                                                               >  4:132109‑M1/24‑79 (MQ=255)
                                                                                                                     tcgcgccagcgcatcgtcggccaGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCt                                                                                               <  3:132109‑M1/56‑1 (MQ=255)
                                                                                                                      gtgtAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGcgcg                        <  1:237815/149‑1 (MQ=255)
                                                                                                                         tAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGa                     >  4:285311/1‑149 (MQ=255)
                                                                                                                          aaCAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGAt                    >  1:322870/1‑149 (MQ=255)
                                                                                                                           aCAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATg                   >  1:98558/1‑149 (MQ=255)
                                                                                                                             agagGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcgacg                                                                                  >  4:50178/1‑84 (MQ=255)
                                                                                                                             agagGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCcgacg                                                                                  <  3:50178/84‑1 (MQ=255)
                                                                                                                              gagGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCg                <  4:299541/149‑1 (MQ=255)
                                                                                                                                 gcgggcgCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGc             >  8:131068/1‑149 (MQ=255)
                                                                                                                                    ggcgCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTcc          <  7:177910/149‑1 (MQ=255)
                                                                                                                                            GCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCgg  <  7:262500‑M1/149‑1 (MQ=255)
                                                                                                                                            GCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCg   >  3:285311‑M1/1‑148 (MQ=255)
                                                                                                                                            |                                                                                                                                                     
GCAGGTCGTCGGCGGGGGCGCCGGCGATCAGCAGCGGCCCCTGAAACAGCTCTGCCTGACGGAGCAACACTTCACTGCGCGGGTCCATGGACGACGTCTCCTGGAAAAAAGTGGCGCAGTGTAACAGAGGCGGGCGCCTGGCTCAGCTGACCACGCGGCGTGGCTGCCCGGCGAAGAAGGCCTGGGCGTTCTCGCTGAGCTGGCCGACGATGCGCTGGCGCGACTCCACGGCACCCCAGGCGCTGTGCGGGGTGATGATCAGGCGCGGGATGCCGGGCTCCAGCAGCGG  >  NC_002947/877071‑877359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.