New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	974820 =	56 (1.110)	4 (0.090)	4/234	NT	8.4%	coding (212/543 nt)	ycfJ	flagella biosyntheis regulator
	?	NC_002947	974890 =	36 (0.790)					coding (282/543 nt)	ycfJ	flagella biosyntheis regulator

TAGGTATCACGCTCCTGCATGCCTTCCTGCACCTTGTTACCCGCATAACCACCACCGACCGCACCGGCCACCGTGGCAATCTTCTTGCCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/974973‑974820 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtaccggcaaGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTAACAAGGTGCAGGAAGGCATGCAGGAGCGTGATACCTACACAACCACGCAAACCCGCTGCAACACGGTCAACGACATCAGTGAGAAGGTGGTGGGCTA  >  NC_002947/974890‑975033                                                                                                                                                                                                                                                                                                            TAGGTATCACGCTCCTGCATGCCTTCCTGCACCTTGTTACCCGCATAACCACCACCGACCGCACCGGCCACCGTGGCAATCTTCTTGCCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTAC                                                                                                                                                        <  5:266744/148‑1    GTATCACGCTCCTGCATGCCTTCCTGCACCTTGTTACCCGCATAACCACCACCGACCGCACCGGCCACCGTGGCAATCTTCTTGCCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGG                                                                                                                                                     >  4:113583/1‑148                                                                                     TTGCCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGGCAAGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTA                                                                                                   <  1:230183/117‑1                                                                                     TTGCCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGGCAAGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTA                                                                                                   >  2:230183/1‑117                                                                                        CCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGGCAAGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTAACAAGGTGCAGGAAGGCATGCAGGAGCG                                                                       >  5:226359/1‑142                                                                                        CCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGGCAAGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTAACAAGGTGCAGGAAGGCATGCAGGAGCG                                                                       <  6:226359/142‑1                                                                                                                                                      GGCAAGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTAACAAGGTGCAGGAAGGCATGCAGGAGCGTGATACCTACACAACCACGCAAACCCGCTGCAACACGGTCAACGACATCAGTGAGAAGGTGGTGGGCTA  >  2:94942/1‑149                                                                                                                                                                                                                                                                                                            TAGGTATCACGCTCCTGCATGCCTTCCTGCACCTTGTTACCCGCATAACCACCACCGACCGCACCGGCCACCGTGGCAATCTTCTTGCCGGTACCGCCACCAATCTGGTTACCCAACAGACCACCTGCCAACGCACCGACCACGGTACCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/974973‑974820 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtaccggcaaGAAGATTGCCACGGTGGCCGGTGCGGTCGGTGGTGGTTATGCGGGTAACAAGGTGCAGGAAGGCATGCAGGAGCGTGATACCTACACAACCACGCAAACCCGCTGCAACACGGTCAACGACATCAGTGAGAAGGTGGTGGGCTA  >  NC_002947/974890‑975033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.