New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1400633	44 (0.870)	4 (0.080)	4/244	NT	8.1%	coding (603/807 nt)	ybgF	TolQRA transport system periplasmic protein
	?	NC_002947	= 1400657	49 (1.030)					coding (627/807 nt)	ybgF	TolQRA transport system periplasmic protein

AACAGAAAGACTTCGACAAGGCCAGCCAGGCGTTCAACGCCTTCCTGCGCAAGTACCCCAACAGCCAGTACGCCGGTAATGCCCAATACTGGTTGGGTGAAGTGAACCTGGCCAAGGGTGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1400509‑1400633 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacctgGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTTGGGGTACTTGCGCAGGAAGGCGTTGAACGCCTGGCTGGCCTTGTCGAAGTCT  <  NC_002947/1400657‑1400516                                                                                                                                                                                                                                                                             AACAGAAAGACTTCGACAAGGCCAGCCAGGCGTTCAACGCCTTCCTGCGCAAGTACCCCAACAGCCAGTACGCCGGTAATGCCCAATACTGGTTGGGTGAAGTGAACCTGGCCAAGGGTGACCTGGGCAAAGGCCTGGCTGGCGCCTTG                                                                                                                        >  7:161899/1‑149               GACAAGTCCAGCCAGGCGTTCAACGCCTTCCTGCGCAAGTACCCCAACAGCCAGTACGCCGGTAATGCCCAATACTGGTTGGGTGAAGTGAACCTGGCCAAGGGTGACCTGGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTG                                                                                                           <  8:161899/148‑1                 CAAGGCCAGCCAGGCGTTCAACGCCTTCCTGCGCAAGTACCCCAACAGCCAGTACGCCGGTAATGCCCAATACTGGTTGGGTGAAGTGAACCTGGCCAAGGGTGACCTGGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACC                                                                                                               >  3:129611/1‑142                 CAAGGCCAGCCAGGCGTTCAACGCCTTCCTGCGCAAGTACCCCAACAGCCAGTACGCCGGTAATGCCCAATACTGGTTGGGTGAAGTGAACCTGGCCAAGGGTGACCTGGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACC                                                                                                               <  4:129611/142‑1                                                                                                                       TGACCTGGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTTGGGGTACTTGCGCAGGAAGGCGTTGAACGCCTGGCTGGCCTTGTCGAAGTCT  <  8:163916/149‑1                                                                                                                             GGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTTGGGGTACTTGCGCAGGAAGGCGTTGAACGCCTGGCTGGC               >  7:246/1‑130                                                                                                                             GGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTTGGGGTACTTGCGCAGGAAGGCGTTGAACGCCTGGCTGGC               <  8:246/130‑1                                                                                                                             GGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTT                                                      <  5:49187/91‑1                                                                                                                             GGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTT                                                      >  6:49187/1‑91                                                                                                                                                                                                                                                                             AACAGAAAGACTTCGACAAGGCCAGCCAGGCGTTCAACGCCTTCCTGCGCAAGTACCCCAACAGCCAGTACGCCGGTAATGCCCAATACTGGTTGGGTGAAGTGAACCTGGCCAAGGGTGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1400509‑1400633 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacctgGGCAAAGGCCTGGCTGGCGCCTTGCAGGTCACCCTTGGCCAGGTTCACTTCACCCAACCAGTATTGGGCATTACCGGCGTACTGGCTGTTGGGGTACTTGCGCAGGAAGGCGTTGAACGCCTGGCTGGCCTTGTCGAAGTCT  <  NC_002947/1400657‑1400516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.