New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 158563158 (1.150)4 (0.080) 4/244 NT 6.9% coding (243/876 nt) PP_1389 oxaloacetate decarboxylase
?NC_002947 = 1585659 53 (1.110)coding (271/876 nt) PP_1389 oxaloacetate decarboxylase

TTCGACCCAATGTCGGCACGCATTGCCGCAGACCTGGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1585479‑1585631
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcggCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGCGGGTGGCCTGCTCGACGAACTCGCTGAGGGTGATCAGAGCGAAGTCCGGAGCAGCCAGTACCTGCAACGAAGCGACCGAACCGCCGAGGATACCGACTTCGAAGCC  <  NC_002947/1585659‑1585515
                                                                                                                                                                                                                                                                                                          
TTCGACCCAATGTCGGCACGCATTGCCGCAGACCTGGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGG                                                                                                                                                       >  5:241505/1‑149
   GACCCAATGTCGGCACGCATTGCCGCAGACCTGGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCG                                                                                                                                                    <  7:227766/149‑1
   GACCCAATGTCGGCACGCATTGCCGCAGACCTGGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTC                                                                                                                                                     <  2:188467/148‑1
               GCACGCATTGCCGCAGACCTGGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCACCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCGGCGTCGGCCAG                                                                                                                                         >  1:103246/1‑148
                                   GGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCGGCGTCGGCCAGTACCGGCAGTTGCGCGACCC                                                                                                                     >  2:203881/1‑148
                                           AAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCGGCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGC                                                                                                            <  1:203881/149‑1
                                             GTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCGGCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGCGG                                                                                                          <  2:103246/149‑1
                                                                                                                                                      CGGCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGCGGGTGGCCTGCTCGACGAACTCGCTGAGGGTGATCAGAGCGAAGTCCGGA                                                          <  5:220732/92‑1
                                                                                                                                                      CGGCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGCGGGTGGCCTGCTCGACGAACTCGCTGAGGGTGATCAGAGCGAAGTCCGGA                                                          >  6:220732/1‑92
                                                                                                                                                       GGCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGCGGGTGGCCTGCTCGACGAACTCGCTGAGGGTGATCAGAGCGAAGTCCGGAGCAGCCAGTACCTGCAACGAAGCGACCGAACCGCCGAGGATACCGACTTCGAAGCC  >  2:75451/1‑147
                                                                                                                                                                                                                                                                                                          
TTCGACCCAATGTCGGCACGCATTGCCGCAGACCTGGGCTTCGAAGTCGGTATCCTCGGCGGTTCGGTCGCTTCGTTGCAGGTACTGGCTGCTCCGGACTTCGCTCTGATCACCCTCAGCGAGTTCGTCGAGCAGGCCACCCGCATTGGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1585479‑1585631
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcggCGTCGGCCAGTACCGGCAGTTGCGCGACCCGACCAATGCGGGTGGCCTGCTCGACGAACTCGCTGAGGGTGATCAGAGCGAAGTCCGGAGCAGCCAGTACCTGCAACGAAGCGACCGAACCGCCGAGGATACCGACTTCGAAGCC  <  NC_002947/1585659‑1585515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.