New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1792172	47 (0.930)	3 (0.060)	3/240	NT	7.3%	coding (822/1359 nt)	rseP	regulatory intramembrane protein RIP
	?	NC_002947	= 1792216	33 (0.700)					coding (866/1359 nt)	rseP	regulatory intramembrane protein RIP

CGATCACCCCGGTGCTGGCCGAGATCGATCCGAAGGGGCCGGCTGCCGCTGCGGGCCTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAG‑GTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1792018‑1792172 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaag‑gtcACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTTCAGGCC  <  NC_002947/1792216‑1792071                                                                                                                                                                                                                                                                                                                CGATCACCCCGGTGCTGGCCGAGATCGATCCGAAGGGGCCGGCTGCCGCTGCGGGCCTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCTACCGCGTGCGCGCCCGCCCGGATGCC                                                                                                                                                           <  6:181112/149‑1                                                             AAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGAGTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGC                                                                                               <  1:88778/149‑1                                                                                   TCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAG‑GTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCA                                                                                              <  3:54626/127‑1                                                                                   TCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAG‑GTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCA                                                                                              >  4:54626/1‑127                                                                                                                                                    CCAAG‑GTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTT        >  5:321210/1‑148                                                                                                                                                      AAG‑GTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTTCAG     <  3:86313/149‑1                                                                                                                                                       AG‑GTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTTCAGG    <  7:220246/149‑1                                                                                                                                                          GTCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTCCAGGCC  <  7:22278/149‑1                                                                                                                                                           TCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTTCAGG    <  7:225114/146‑1                                                                                                                                                           TCACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTTCAGG    >  8:225114/1‑146                                                                                                                                                                                                                                                                                                                CGATCACCCCGGTGCTGGCCGAGATCGATCCGAAGGGGCCGGCTGCCGCTGCGGGCCTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAG‑GTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1792018‑1792172 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaag‑gtcACCGGCAGTTCCAGGGCAGCGCCGTCGCGCTCCACTCGCACCACGACCTTGGCATCCGGGCGGGCGCGCACGCGGTCGACTACCTGCTGCCATTCGGTCACTGCCAAATCATCCAGAGCCAGCAGCTTGTCACCGGTTTTCAGGCC  <  NC_002947/1792216‑1792071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.