New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1792172	47 (0.930)	3 (0.060)	3/240	NT	7.3%	coding (822/1359 nt)	rseP	regulatory intramembrane protein RIP
	?	NC_002947	= 1792216	33 (0.700)					coding (866/1359 nt)	rseP	regulatory intramembrane protein RIP

CGGGCCTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTGAGAGCTTGTCGCGTACCTGGAA  >  NC_002947/1792069‑1792363                                                                                                                                                    |                                                                                                                                                    cGGGCCTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGt                                                                                                                                                     >  2:208131/1‑148 (MQ=255)   ggCCTGGAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgac                                                                                                                                                  <  7:22278‑M2/149‑4 (MQ=255)     ccTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgacct                                                                                                                                                <  7:220246‑M2/149‑6 (MQ=255)     ccTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTga                                                                                                                                                   >  8:225114‑M2/1‑144 (MQ=255)     ccTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTga                                                                                                                                                   <  7:225114‑M2/146‑3 (MQ=255)      cTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgacctt                                                                                                                                               <  3:86313‑M2/149‑7 (MQ=255)         aaaaCCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgaccttgg                                                                                                                                             >  5:321210‑M2/1‑140 (MQ=255)                    cAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAggggg                                                                                                                                 <  3:244685/149‑1 (MQ=255)                    cAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAggggg                                                                                                                                 <  5:199728/149‑1 (MQ=255)                     aaGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGAAGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAgggg                                                                                                                                  >  5:244952/1‑147 (MQ=255)                       gctgctGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGa                                                                                                                                >  8:168096/1‑147 (MQ=255)                       gctgctGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGa                                                                                                                                <  7:168096/147‑1 (MQ=255)                              gCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAgg                                                                                                                        <  8:250842/148‑1 (MQ=255)                              gCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAgg                                                                                                                        <  4:138835/148‑1 (MQ=255)                                    gatgatTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAggacccagc                                                                                                                 >  8:120295/1‑142 (MQ=255)                                    gatgatTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCgg                                                                                                                 >  5:280578/1‑149 (MQ=255)                                       gatTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAgg                                                                                                                                    <  2:208991/127‑1 (MQ=255)                                        atTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTgg                                                                                                              <  8:22278/148‑1 (MQ=255)                                                gTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTgg                                                                                                     <  6:280578/149‑1 (MQ=255)                                                     cGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGa                                                                                                                                <  3:78669/117‑1 (MQ=255)                                                     cGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGa                                                                                                                                >  4:78669/1‑117 (MQ=255)                                                             agcagGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCaaa                                                                                        <  7:11755/149‑1 (MQ=255)                                                                              gTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTTGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGc                                                                       >  3:151833/1‑149 (MQ=255)                                                                                        gcccgGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTc                                                             >  2:291521/1‑149 (MQ=255)                                                                                           cgGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCcgc                                                          >  5:39779/1‑149 (MQ=255)                                                                                             gATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTcc                                                            >  8:140877/1‑145 (MQ=255)                                                                                             gATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTcc                                                            <  7:140877/145‑1 (MQ=255)                                                                                               tGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgaccttggcatccgggcgggcgcgcacgcggtcgactacctgctgccattcggtcactgccaaatcatccaga                                                                            <  3:54626‑M2/127‑74 (MQ=255)                                                                                               tGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgaccttggcatccgggcgggcgcgcacgcggtcgactacctgctgccattcggtcactgccaaatcatccaga                                                                            >  4:54626‑M2/1‑54 (MQ=255)                                                                                                gCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTgactcttggcatccgggcgggcgcgcacgcggtcgactacctgctgccattcggtcactgccaaatcatccagagccagcagcttgtcaccggttt                                                     <  1:88778‑M2/149‑97 (MQ=255)                                                                                                  cAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCa                                                   <  1:208131/149‑1 (MQ=255)                                                                                                                     gAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTg                                                                                                               <  3:248706/70‑1 (MQ=255)                                                                                                                     gAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTg                                                                                                               >  4:248706/1‑70 (MQ=255)                                                                                                                        cgcgACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCggt                             <  6:244952/149‑1 (MQ=255)                                                                                                                        cgcgACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCggt                             <  1:291521/149‑1 (MQ=255)                                                                                                                           gACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACa                                                                  <  2:229884/109‑1 (MQ=255)                                                                                                                           gACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACa                                                                  >  1:229884/1‑109 (MQ=255)                                                                                                                                cgcTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTTGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTgaga                     <  4:151833/149‑1 (MQ=255)                                                                                                                                 gcTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCCGCTACGGCCCGCTGGATGCGGTGGGTGagag                    >  7:262228/1‑149 (MQ=255)                                                                                                                                     cccTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGCGTGAGCGCtgg                >  8:203928/1‑147 (MQ=255)                                                                                                                                          gAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTGAGAGCTTGTcgcg           <  4:86313/149‑1 (MQ=255)                                                                                                                                          gAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTGAGAGCTTGTcgcg           >  3:301496/1‑149 (MQ=255)                                                                                                                                             cTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTGAGAGCTTGTCGCGTa         >  5:232957/1‑148 (MQ=255)                                                                                                                                                   gTGACCTTGGCCCGCAAGGGGGAGGGCATGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTGAGAGCTTGTCGCGTACCTGGaa  >  1:182686/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGGGCCTGAAAACCGGTGACAAGCTGCTGGCTCTGGATGATTTGGCAGTGACCGAATGGCAGCAGGTAGTCGACCGCGTGCGCGCCCGCCCGGATGCCAAGGTCGTGGTGCGAGTGGAGCGCGACGGCGCTGCCCTGGAACTGCCGGTGACCTTGGCCCGCAAGGGGGAGGGCAAGGCAGTCGGTGGCTATCTTGGCGCTGGTGTCAAAGGTGGCGAATGGCCTGCCAACATGCTCCGCGAAATCAGCTACGGCCCGCTGGATGCGGTGGGTGAGAGCTTGTCGCGTACCTGGAA  >  NC_002947/1792069‑1792363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.