New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2101481 =	48 (0.950)	5 (0.110)	5/234	NT	10.7%	intergenic (+17/+59)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
	?	NC_002947	2101525 =	40 (0.880)					intergenic (+61/+15)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein

TGGACCGCATGGCCCCGGCAGAAGACGAGCACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2101640‑2101481 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACAG  >  NC_002947/2101525‑2101668                                                                                                                                                                                                                                                                                                                  TGGACCGCATGGCCCCGGCAGAAGACGAGCACAACGAATAGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAG                                                                                                                                                             >  2:316888/1‑149      CGCATGGCCCCGGCAGAAGACGAGCACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCG                                                                                                                                                           >  4:91299/1‑146         ATGGCCCCGGCAGAAGACGAGCACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGG                                                                                                                                                     <  1:155694/149‑1                        GACGAGCACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGA                                                                                                                                                       <  7:285116/132‑1                        GACGAGCACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCAACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGA                                                                                                                                                       >  8:285116/1‑132                              CACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCA                                                                                                                                <  5:304647/149‑1                                                      AAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCC                                                                                                                                                   <  5:258596/106‑1                                                      AAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCC                                                                                                                                                   >  6:258596/1‑106                                                                                                                    CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGG                                          >  1:23237/1‑149                                                                                                                     CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGC                                         >  8:177345/1‑149                                                                                                                         CTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATG                                     <  6:304647/149‑1                                                                                                                                         CCGCTCCTACAAGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGG                     <  2:23237/149‑1                                                                                                                                                     GCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACATTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGG         <  1:235829/149‑1                                                                                                                                                            GGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACAG  <  1:128379/149‑1                                                                                                                                                            GGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACA   <  5:3973/148‑1                                                                                                                                                                                                                                                                                                                  TGGACCGCATGGCCCCGGCAGAAGACGAGCACAACGAATTGACCGATGGGCTCAAGACCGATGAGGAAGAAACCTGGAAGAAGAAGGTGATCTACGACTGATTGGTTAACCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2101640‑2101481 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACAG  >  NC_002947/2101525‑2101668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.