New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2101481 = | 48 (0.950) | 5 (0.110) | 5/234 | NT | 10.7% | intergenic (+17/+59) | msrC/PP_1878 | free methionine‑(R)‑sulfoxide reductase/hypothetical protein |
? | NC_002947 | 2101525 = | 40 (0.880) | intergenic (+61/+15) | msrC/PP_1878 | free methionine‑(R)‑sulfoxide reductase/hypothetical protein |
TTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGG > NC_002947/2101336‑2101626 | ttGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGc < 7:249249/149‑1 (MQ=255) ctgttggcccgggccaatgcccaggtactggaccgcatggccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGcc < 1:128379‑M1/5‑1 (MQ=255) tgttggcccgggccaatgcccaggtactggaccgcatggccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGcc < 5:3973‑M1/5‑1 (MQ=255) cccgggccaatgcccaggtactggaccgcatggccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaatgtgatctacgactgattggttaacctgtgcCGGCCTCTTCGc < 1:235829‑M1/12‑1 (MQ=255) gACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCt > 6:126770/1‑149 (MQ=255) gATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCgg > 3:169771/1‑149 (MQ=255) cccaggtactggaccgcatggccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCgg < 2:23237‑M1/24‑1 (MQ=255) aTTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCggg > 3:91299/1‑149 (MQ=255) acctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCcgcg > 3:134180/1‑146 (MQ=255) cctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGaa > 2:208647/1‑147 (MQ=255) cctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGAT‑AATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAagag > 6:323278/1‑149 (MQ=255) catggccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAagag < 6:304647‑M1/40‑1 (MQ=255) gccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg > 8:177345‑M1/106‑149 (MQ=255) acAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg > 5:216703/1‑149 (MQ=255) acAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg > 6:318512/1‑149 (MQ=255) ccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg > 1:23237‑M1/105‑149 (MQ=255) aGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGc < 1:208647/149‑1 (MQ=255) cccGACGGTCGGGCGGTTCAGCGAGGCGGACTAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGca > 7:150197/1‑148 (MQ=255) cccGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGGTTGTAGGa < 6:312827/121‑1 (MQ=255) cccGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAagag < 8:100483/141‑1 (MQ=255) cccGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAagag > 7:100483/1‑141 (MQ=255) cccGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCCGTTGTAGGa > 5:312827/1‑121 (MQ=255) cccGACCGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGca > 2:146926/1‑148 (MQ=255) cGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGGCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAg < 3:27851/149‑1 (MQ=255) cGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTATCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAg < 3:139405/149‑1 (MQ=255) gTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAg < 6:189932/149‑1 (MQ=255) aGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGt < 5:126770/149‑1 (MQ=255) gCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCtt < 2:126064/90‑1 (MQ=255) gCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCtt > 1:126064/1‑90 (MQ=255) cGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTTCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGATGCCGGCACAGGTTAACCAATCAGTCGTAg < 7:201109/149‑1 (MQ=255) cGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCg > 8:201109/1‑146 (MQ=255) gCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGca < 6:15204/123‑1 (MQ=255) gCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGca > 5:15204/1‑123 (MQ=255) ggACTAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAcc < 8:150197/149‑1 (MQ=255) gTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACcttcttct > 1:177297/1‑149 (MQ=255) ggggCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCttcttcttc < 4:169771/149‑1 (MQ=255) gCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAg > 1:32617/1‑149 (MQ=255) tatcgtttGGCGGTGATCTTTCTGTCGTTGAATTACTGTTGAT‑TATGTTGCCTGAGTCGGAATCTTAGCTTGTAGGTGCGTTTTTAGCCGCGAAGTGGCCGTCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGtt < 5:323278/141‑1 (MQ=255) gTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTcc > 4:162560/1‑149 (MQ=255) ggcggcGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTc < 2:177297/148‑1 (MQ=255) ggcggcGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTc < 4:134180/148‑1 (MQ=255) ggcgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCTGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCg < 1:212482/149‑1 (MQ=255) ggcgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCg > 5:156770/1‑149 (MQ=255) tttCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCtt > 3:4470/1‑147 (MQ=255) tCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGc > 6:109278/1‑149 (MQ=255) tCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTCCCAGGTTTCTTCCTCATCGGTCt < 1:146926/144‑1 (MQ=255) actgCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTc > 5:85095/1‑149 (MQ=255) ctgATCAATGTTGCCTTAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGtt < 6:216703/148‑1 (MQ=255) ctgATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAcc > 7:217197/1‑95 (MQ=255) ctgATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAcc < 8:217197/95‑1 (MQ=255) ctgATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGtt < 5:109278/148‑1 (MQ=255) tgattggttaacctgtgcCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTtgtg < 5:304647‑M1/131‑1 (MQ=255) aTCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTttcttc > 3:306872/1‑112 (MQ=255) aTCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTttcttc < 4:306872/112‑1 (MQ=255) aTCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTtgtg < 3:162560/148‑1 (MQ=255) ccTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCTATTCGTTGTGCTCGTCTTCTg > 1:316888/1‑149 (MQ=255) cTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGc > 6:3973/1‑149 (MQ=255) aGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCgg > 6:100043/1‑149 (MQ=255) | TTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGG > NC_002947/2101336‑2101626 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |