| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2727129 = | 62 (1.230) | 6 (0.130) | 6/242 | NT | 9.7% | coding (193/627 nt) | PP_2388 | LysE family transporter |
| ? | NC_002947 | 2727174 = | 53 (1.120) | coding (148/627 nt) | PP_2388 | LysE family transporter | |||||
CTGCTACTGATCGCCACTCCCGGCCCGGTGGTGGCACTGATCGTCAACACTGCGGCCGCCTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2727282‑2727129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagtgATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGGGCGTAGGTGGCGGTGAGTGCGGTATT > NC_002947/2727174‑2727318 CTGCTACTGATCTCCACTCCCGGCCCGGTGGAGGCACTGATCGTCAACACTGCGGCCGCCTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCAC < 7:229913/149‑1CTGCTACTGATCGCCACTCCCGGCCCGGTGGTGGCACTGATCGTCAACACTGCGGCCGCCTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCAC < 6:324091/149‑1CTGCTACTGATCGCCACTCCCGGCCCGGTGGTGGCACTGATCGTCAACACTGCGGCCGCCTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCAC < 4:153604/149‑1 TGCTACTGATCGCCACTCCCGGCCCGGTGGTGGCACTGATCGTCAACACTGCGGCCGCCTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCAC > 5:331353/1‑148 TACTGATCGCCACTCCCGGCCCGGTGGTGGCACTGATCGTCAACACTGCGGCCGACTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGT > 3:228360/1‑149 ATCACTGGTGCTGATCGGCGCGGCAGTGTGGATCATCCTCACCAGTGATGCCCTGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGAT > 6:264956/1‑147 ACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGG > 3:80030/1‑140 ACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGG < 4:80030/140‑1 CTGATCGGCGCGGCAGCGTGGATCA‑‑‑GCACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCAC > 1:309145/1‑116 CTGATCGGCGCGGCAGCGTGGATCA‑‑‑GCACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCAC < 2:309145/116‑1 GGCGCGGCAGTGTGGATCATCCTCACCAGTGATGCCCTGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAG < 5:264956/149‑1 CACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACTCCCGGCCCGGTGGTGG > 3:192891/1‑104 CACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACTCCCGGCCCGGTGGTGG < 4:192891/104‑1 CACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGGGCGTAGGTGGCGGTGAGTGCGG < 8:34670/149‑1 CACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGGGCGTAGGTGGCGGTGAGTGCGG < 7:288660/149‑1 CACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGC < 2:224596/105‑1 CACCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGC > 1:224596/1‑105 CCAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGGGCGTAGGTGGCGGTGAGTGCGGTA > 1:302221/1‑149 CAGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGG < 2:38954/124‑1 AGTGATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGGGCGTAGGTGGCGGTGAGTGCGGTATT > 7:294012/1‑149 CTGCTACTGATCGCCACTCCCGGCCCGGTGGTGGCACTGATCGTCAACACTGCGGCCGCCTCCGGCTCGCGCAAGGCCATGTTCACCGCCGTCGGCACCAACTGGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2727282‑2727129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagtgATGCCCAGTTGGTGCCGACGGCGGTGAACATGGCCTTGCGCGAGCCGGAGGCGGCCGCAGTGTTGACGATCAGTGCCACCACCGGGCCGGGAGTGGCGATCAGTAGCAGCACGGTGAGGGCGTAGGTGGCGGTGAGTGCGGTATT > NC_002947/2727174‑2727318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |